Rhodopseudomonas palustris TIE-1: Rpal_5204
Help
Entry
Rpal_5204 CDS
T00722
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rpt
Rhodopseudomonas palustris TIE-1
Pathway
rpt03030
DNA replication
rpt03410
Base excision repair
rpt03420
Nucleotide excision repair
rpt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rpt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rpal_5204
03410 Base excision repair
Rpal_5204
03420 Nucleotide excision repair
Rpal_5204
03440 Homologous recombination
Rpal_5204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpt03032
]
Rpal_5204
03400 DNA repair and recombination proteins [BR:
rpt03400
]
Rpal_5204
Enzymes [BR:
rpt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Rpal_5204
DNA replication proteins [BR:
rpt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Rpal_5204
DNA repair and recombination proteins [BR:
rpt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Rpal_5204
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rpal_5204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ACF03692
LinkDB
All DBs
Position
5611612..5614689
Genome browser
AA seq
1025 aa
AA seq
DB search
MPKTTKSAAATPAASSVTPPAPVGVKPPGKGDHIFLVDGSSYIFRAYHALPPLNRKSDGL
QVNAVLGFCNMLWKLLRDMPPENRPTHLAIIFDKSEVTFRNHLYPEYKAHRPPAPEDLIP
QFALIREAVRAFDLPCLEQSGFEADDLIATYVREACEAGATATIVSSDKDLMQLVTDCVV
MYDTMKDRRIGVPEVIEKFGVPPNKVVEVQALAGDSVDNVPGVPGIGIKTAAQLINEYGD
LETLLARAPEIKQPKRREALIENAEKARISRKLVLLDDHVQLEVPLEELAVHEPDARKLV
AFLKAMEFTTLTRRVADYAQIDPSDVEAETALKSAVPPLAKSAPPSGDLFAGQEPSPQPS
PAGGGGSAPASGQGGPLNAGRGRDGRPGVVLSPETLVAARAEAARKIPVDRTAYKTLHSL
DELQGFIARIHDTGIVALEAAATSIDPMQAELIGLALALGPNDACYIPLPHKQSGDGDGL
FAAGLAPDQIGPRDALDALKPILESAGVAKVGFAIKFAAVLLAQHGLTLRNIDDPQLMSY
ALDAGRGSHALDALSESNLGHTLHTLTELTGTGKNKIGFDQVPVDRATAYAAERADVSLR
LARVLKPRLVAGSMTAVYETLERPLVGVLARMERRGISIDRQVLSRLSADFAQTAARIEA
EIRELAGEDINIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKI
LDWRQVSKLRSTYTDALPNYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGR
KIRRAFVATPGNKLVSADYSQIELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVE
GMPSEIRRRAKAINFGIIYGISAFGLANQLSIPREEAGAYIKRYFERFPGIRAYMDETRD
FCRTHGYVTTLFGRKCHYPDIKASNPSIRAFNERAAINARLQGSAADIIRRAMVRMEDAL
AEKKLSAQMLLQVHDELIFEVPEAEVEATLPVVRSVMQDAPFPAVILNVPLQVDARAADN
WDEAH
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaaacgacaaagtccgccgctgcgacgcctgccgcttcctccgtcacgccccct
gcccccgtcggcgtcaagccgcccggcaagggcgaccacatcttcctggtcgacggctcg
tcgtacatcttccgcgcctatcacgcgctgccgccgctgaaccgcaagtcggacgggctg
caggtcaatgccgtgctcggcttctgcaacatgctgtggaagctgctccgcgacatgccg
ccggagaaccggccgacgcatctcgccatcatcttcgacaagtcggaagtcaccttccgc
aaccatctctaccccgaatacaaggcgcaccggccgccggcaccggaggatctgatcccg
caatttgccctgatccgcgaggcggtgcgggcgttcgacctgccgtgcctggaacagtcc
ggtttcgaggccgacgatctgatcgccacttacgtgcgcgaggcgtgcgaggccggggcc
acggcgacgatcgtgtcgtccgacaaggacctgatgcagctcgtgaccgactgcgtggtg
atgtacgacaccatgaaggaccgccgcatcggcgtgcccgaggtgatcgagaaattcggc
gtgccgcccaataaggtggtcgaagtccaggcgctcgccggcgacagcgtcgacaacgtg
ccgggcgtgccgggcatcggcatcaagaccgccgcgcagctgatcaacgaatatggcgac
ctcgaaaccctgctggcccgcgcacctgagatcaagcagccgaagcggcgcgaggcgctg
atcgagaacgccgagaaggcgcggatctcgcgcaagctggtgctgctcgacgaccatgtg
caactagaggtcccgctggaagagctcgcagtgcacgagcccgacgcgcgaaaactggtg
gcattcctcaaggcgatggaattcaccacgctgacgcggcgcgtcgccgactatgcgcag
atcgatccgtcggatgtcgaggcggagacggcgctgaagtcggccgtgccgccgcttgcg
aagagcgcgcccccgagcggcgacctgtttgcgggccaagagccctcaccccagccctct
cccgcaggcgggggagggagcgcgccggcctcgggccaaggtggtccgctgaatgccggc
cgcggccgcgacggcaggccgggcgtcgtgctgtcgccggaaacgctggtggcggcgcgg
gccgaggccgcccgcaagattccggtcgaccgcactgcctacaagacgctgcacagcctc
gacgaactgcagggcttcatcgcccgcatccacgacaccggaatcgtcgcgcttgaagcg
gccgcgacctcgatcgatccgatgcaggcggagctgatcggccttgccctggcgctcggc
ccgaacgacgcctgctacattccgctgccgcataagcagagcggcgacggtgacggcctg
ttcgccgccggcctcgcgcccgaccagatcggcccccgcgacgcgctcgatgcgctgaag
ccgatcctggaatccgccggcgtcgccaaggtcggcttcgcgatcaaattcgccgcggtg
ctgctggcgcagcacggcctgaccttgcgcaacatcgacgatccgcagctgatgtcctac
gcgctcgacgccggccgcggcagccacgcgctcgatgcgctgagcgaaagcaatctcggc
cacaccctgcacacgctcaccgagctgaccggcaccggcaaaaacaagatcggcttcgat
caggtgccggtcgaccgtgccaccgcctatgcggccgaacgcgccgacgtgagcttgcgg
ctggcccgcgtgctgaagccgcgcctcgtcgcaggcagcatgaccgcggtgtacgagacg
ctggagcgccctcttgtcggcgtgctggcgcggatggagcggcgcggcatctcgatcgac
cggcaggtgctgtcgcggctgtcggcggatttcgcccagaccgcggcgcggatcgaggcc
gagatccgggagctcgccggcgaggacatcaatatcggcagtcccaagcagctcggcgac
atcctgttcggcaagatgggcctgccgggcggcagcaagaccaagaccggcgcgtggtcg
acctctgcgcaggtgctcgacgagctcgccgaacagggccacgaattcccgcgcaagatt
ttggactggcggcaggtcagcaagctgcgctcgacctacaccgacgcgctgccgaattac
gtgcatccgcagacccaccgcgtccacaccacctatgcactcgccgccaccaccaccggt
cggctgtcgtcgaacgagccgaacctgcagaacatcccggtgcgcaccgaggatggccgc
aagatccgccgcgctttcgtggcgacgcccggcaacaagctggtgtcggcggactattcg
cagatcgaactgcgcctcttgtccgaagtcgccgacgtgccggcgctgcgcaaggcgttc
caggacggcatcgacattcacgcgatgacggcgtccgagatgttcggcgtgccggtcgag
ggcatgccgtcggaaattcgccgccgggcgaaagcgatcaatttcggcatcatctacggc
atctcggcattcggcctcgccaaccagctgagcatcccacgcgaggaagccggcgcctac
atcaagcgctacttcgagcgcttcccaggcatccgcgcctatatggacgagacccgcgat
ttctgccggacgcacggctatgtcaccacgctgttcggccgcaaatgccactacccggac
atcaaggcgtccaatccgtcgatccgcgccttcaacgagcgcgccgccatcaacgcaagg
ctgcaaggctccgccgccgacatcatccgccgcgccatggtgcggatggaggacgcactc
gccgagaagaagctctcggcgcagatgctgctgcaggtccacgacgaactgatcttcgaa
gtgccggaggccgaggtggaagcgacgctgccggtggtccgctcggtgatgcaggacgcg
ccgttcccggcggtgatcctcaacgtcccgctgcaggtggatgcgcgggcggcggataac
tgggacgaagcgcattag
DBGET
integrated database retrieval system
