Rhodopseudomonas palustris TIE-1: Rpal_5313
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Entry
Rpal_5313 CDS
T00722
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rpt
Rhodopseudomonas palustris TIE-1
Pathway
rpt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rpal_5313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpt03019
]
Rpal_5313
03400 DNA repair and recombination proteins [BR:
rpt03400
]
Rpal_5313
Enzymes [BR:
rpt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rpal_5313
Messenger RNA biogenesis [BR:
rpt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rpal_5313
DNA repair and recombination proteins [BR:
rpt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Rpal_5313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
ResIII
HHH
NADH_4Fe-4S
Motif
Other DBs
NCBI-ProteinID:
ACF03799
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All DBs
Position
5733615..5735465
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AA seq
616 aa
AA seq
DB search
MIAPVSRHTDDDLDARALSVLNHVFGLPSFRGQQEAIVRHVADGGDALVLMPTGGGKSLC
YQLPALLREGCGVVVSPLIALMRDQVAGLLESGVRAAALNSTLSYDEANDIEQQLLKGEL
DLLYVAPERLLTPRCLSLLARAKISLFAIDEAHCVSQWGHDFRPEYVGLSAIAEKFPNVP
RIALTATADALTRREIAERLSLTDAPCFVSSFDRPNIRYSIVDKQNAPAQLKAFIDDRHR
GHSGVVYCLSRAKVEDIAETLSKSGLTALPYHAGLPAEIRARNQDRFLNEDGVVIVATIA
FGMGIDKPDVRFVAHLDLPKSIEAYYQETGRAGRDGKPSDAWMAYGLSDIVQQRRMIDES
SGSDAFKRVSMGKLDALVGLCESTGCRRTRLLGYFGETAQHESCGNCDNCLTPPKVIDGT
VAAQKLLSCAYRTGQRFGAQHLIDVLLGRLTDRVTQFGHDKLSVFGIGGEFNEKQWRAVI
RQLVSLGHLAPDSEAFGALKLTETSRAVLKGESEVALREQAGRPPRSKSRRGDLVGGAQR
ETSGDPALFAALKAWRSEVAKARGVPAYVVLHDATLDSLAAAKPRTLDELRGIAGIGDKK
LEHYGAALLAVIGERR
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgatcgctccggtttcgcgccacaccgacgacgacctcgacgcccgggcgctgtcggtt
ctcaaccacgtgttcgggctgccgtcgttccgcggccagcaggaagcgatcgtgcggcat
gtcgccgatggtggcgatgcgctggtgttgatgccgaccggcggcggcaagtcgctgtgc
taccagctgccggcgctgctgcgcgagggctgcggcgtggtggtgtcgccgctgatcgcg
ctgatgcgcgaccaagtcgccggactgctggagagcggcgtgcgcgccgccgcactgaat
tcgacgctgtcctacgacgaagccaacgacatcgagcagcaattgctcaaaggcgagctc
gatctgctctacgtcgcgcccgagcgactgctgacgccgcgctgcctgtcgctgctggcc
cgcgccaaaatctcgctgttcgcgatcgacgaggcgcattgcgtctcgcaatggggccac
gacttccgacccgaatatgtcgggctctcggccatcgccgagaagttccccaatgtgccg
cggatcgcgctgaccgcgaccgccgatgcgctgacccgccgggagatcgccgagcggttg
tcgctgacggacgcgccgtgcttcgtctccagcttcgatcggccgaacatccgctacagc
atcgtcgacaagcagaacgcgccggcgcagctcaaggcgttcatcgacgaccgccatcgc
ggccattccggcgtggtgtattgcctgtcccgcgccaaggtcgaggacattgccgagacg
ctgagcaaatccggcctcaccgcgctgccctatcatgccggcctgcccgccgagatccgc
gcccgcaatcaggaccgtttcctgaacgaggacggcgtggtgatcgtcgccaccatcgcg
ttcggcatggggatcgacaagccggacgtgcgcttcgtcgcccatctcgatctgcccaag
agcatcgaggcctattaccaggagaccggtcgcgccggccgcgacggcaagccgtccgat
gcctggatggcctacgggctatcggacatcgtgcagcagcgccggatgatcgacgagagc
agcggctccgacgcattcaaacgtgtttcgatgggcaagctggatgcgctggtcggcttg
tgcgagtccaccggctgccgccgcacccggctgctcggctatttcggcgagacggcgcag
cacgagagctgcggcaattgcgacaactgcctgaccccgccgaaggtgatcgacggcacg
gtcgccgcacagaagttgttgtcctgcgcctaccgcaccggccagcggttcggcgcccaa
cacctgatcgatgtgctgctcgggcggctgaccgatcgagtcactcagttcggccacgac
aaactgtcggtgttcggcatcggcggcgagttcaacgaaaagcaatggcgcgcggtgatc
cgccaactggtgtcgctcggccacctagcgccggacagcgaggcgttcggcgcgctgaag
ctgaccgagacctcgcgcgcggtgctaaagggcgagtccgaggtggcgctgcgcgagcag
gccggacgcccgccgcggtcgaaatcgcgccgcggcgatctggtcggcggcgcccagcgc
gagaccagcggcgatccggcgctgttcgcggccctgaaggcatggcgatccgaggtggcg
aaggcccgtggcgtgccggcctatgtggtactgcacgatgccaccctcgatagccttgcg
gccgcaaagccgcggacactggacgaactgcgcgggattgctgggatcggtgacaagaag
ctcgagcattacggcgccgcgctgctggcggtgatcggcgaacggcgctag
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