Ralstonia pseudosolanacearum RS 476: CDC45_01160
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Entry
CDC45_01160 CDS
T05645
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rpu
Ralstonia pseudosolanacearum RS 476
Brite
KEGG Orthology (KO) [BR:
rpu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rpu03016
]
CDC45_01160
Enzymes [BR:
rpu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CDC45_01160
Transfer RNA biogenesis [BR:
rpu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CDC45_01160
Prokaryotic type
tRNA splicing ligases
CDC45_01160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AST25924
LinkDB
All DBs
Position
246144..247364
Genome browser
AA seq
406 aa
AA seq
DB search
MSNTSYDTLHVDNGADIKLWTHGVPVEDDARKQLMNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTRGAIIPAAVGVDIGCGMMAARTTLTATDLPDNLHGLRSAIEAAVPHGRTPGAR
DKGAWSTPPATVDAMWAELAEGFQRITDKYPRLRKTNNHKHLGTLGTGNHFIEVCLDEEN
RVWFMLHSGSRGVGNAIGNLFIELAQADMRQHIANLPDRDLAYFEEGSEHFDDYVEAVGW
AQDYARRNRATMMQNVIAAARKVIAKPFAADVEAVNCHHNYVQRETHFGHEVLVTRKGAV
SAQKGQLGIIPGSMGAKSFIVRGLGNEEAFCSCSHGAGRTMSRTQAKKRYTVDDQVRATA
HVECRKDADVIDEIPMAYKDIDAVMAAQADLVEIVHTLRQVVCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgagcaataccagttacgacaccctccacgtcgacaacggcgccgacatcaagctgtgg
acccacggcgtgccggtggaagacgacgcccgcaagcaactgatgaacacggcgaagatg
cccttcatcttcaagcacctggcggtgatgccggacgtgcacctgggcaaggggtcgacc
atcggcagcgtgatcccgacgcggggcgcgatcatcccggcggccgtcggcgtggatatc
ggctgcggcatgatggccgcgcgcaccacgctcaccgcgaccgacctgccggacaacctg
cacggcctgcgcagcgccatcgaggcggcggtaccgcacggccgtacgcctggcgcgcgc
gacaagggggcctggagcacgccgccggccacggtcgatgcgatgtgggcggaactggcc
gagggcttccagcggatcaccgacaagtatccgcggctcaggaagacgaacaaccacaag
cacctcggaacgctcggtaccggcaaccacttcatcgaggtctgcctggatgaagagaac
cgcgtctggttcatgctgcactccggttcgcgcggcgtgggcaatgcgatcggcaacctg
ttcattgaactggcgcaggccgatatgcggcagcatatcgccaacctgccggaccgcgac
ctggcgtatttcgaggaaggcagcgagcactttgacgactacgtggaggcggtgggctgg
gcgcaggactacgcgcgccgcaaccgcgccacgatgatgcagaacgtgatcgcggccgcg
cgcaaggtgatcgccaagccgttcgcggcggacgtcgaggcggtgaactgccaccacaat
tacgtgcagcgcgagacccacttcggccacgaggtgctggtgacgcgcaagggcgcggtg
tcggcacagaaggggcagctcggcatcattccgggttcgatgggcgccaagagcttcatc
gtgcgcgggctgggcaacgaagaagcgttctgctcgtgcagccacggcgcgggccgcacc
atgagccgcacgcaggccaagaagcgctacacggtggatgaccaggtccgtgccaccgcg
cacgtggagtgccgcaaggatgccgacgtcatcgacgaaatcccgatggcgtacaaggac
atcgacgccgtgatggccgcgcaggcggacctggtggagatcgtccatacgctgcggcag
gtggtgtgcgtgaaggggtag
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