Ralstonia pseudosolanacearum RS 476: CDC45_06125
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Entry
CDC45_06125 CDS
T05645
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rpu
Ralstonia pseudosolanacearum RS 476
Pathway
rpu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDC45_06125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpu03021
]
CDC45_06125
03019 Messenger RNA biogenesis [BR:
rpu03019
]
CDC45_06125
Transcription machinery [BR:
rpu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CDC45_06125
Messenger RNA biogenesis [BR:
rpu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CDC45_06125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
NACHT
S1CSD-TOTE-2
AAA_19
DUF7125
Phostensin_N
Motif
Other DBs
NCBI-ProteinID:
AST26809
LinkDB
All DBs
Position
complement(1251084..1252346)
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AA seq
420 aa
AA seq
DB search
MHLTELKSLHVSQLLEMAGQLEIDNAQRMRKQELMFAILKKKAKQGETIFGDGTLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
AQPPEAVKNRIMFENLTPLHPNRTLTLERDIKAEENITGRIIDMIAPIGRGQRALLVASP
KSGKTVMLQHIAHAITANHPEAELFVLLIDERPEEVTEMQRTVRGEVVASTFDEPAVRHV
QVAEMVIEKAKRLVELKKDVVIVLDSITRLARAYNTVVPTSGKVLTGGVDANALQRPKRF
FGAARNLEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL
NKSGTRREELLIKPDILQKVWILRKFIHDMDEVEAMEFLLDKLKSTKNNAEFFDMMRRGS
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatctgacagaactgaaatccctgcatgtgtcccaattgctggaaatggcgggacag
ctggagatcgacaacgcgcagcgcatgcgcaaacaggagctgatgtttgccatcctgaaa
aagaaagcgaaacagggggaaacgattttcggcgacggcacgctggaagtgctgcccgac
ggcttcggctttctgcgctcgccggaaacgtcgtacctggcgagcacggacgacatctac
atcagcccgtcgcagatccgccgcttcaacctgcacaccggcgacaccatcgaaggcgaa
gtccgcacgcccaaggacggcgagcgttacttcgcgctggtgaaggtcgacaaggtcaac
gcccagcctcctgaagcggtcaagaaccgcatcatgttcgagaacctgacgccgctgcat
ccgaaccgcacgctcacgctcgaacgcgacatcaaggccgaggagaacatcaccggccgc
atcatcgacatgatcgccccgatcggccgcggccagcgcgcgctgctggtggcctcgccc
aagtcgggcaagaccgtgatgctgcagcacatcgcgcatgccatcacggccaaccatccg
gaagccgaactgttcgtgctgctgatcgacgagcgtccggaagaagtgaccgagatgcag
cgcaccgtgcgcggcgaagtggtggcctccaccttcgacgagccggccgtgcgccacgtg
caggtcgcggaaatggtgatcgagaaggccaagcgcctggttgaactgaagaaggacgtg
gtgatcgtgctggactcgatcacgcgcctggcccgcgcctacaacaccgtggtgccgacc
tccggcaaggtgctgaccggcggcgtggacgccaacgccctgcagcgtccgaagcgcttc
ttcggtgccgcgcgcaatctggaggaaggcggttcgctgaccatcatcggcacggcgctg
atcgaaaccggcagccgcatggacgacgtgatctacgaagaattcaagggcaccggcaac
atggaagtgcacctggagcgccgcctggccgagaagcgcgtctaccccgccatcaacctg
aacaagtcgggcacgcgccgcgaagagctgctgatcaagccggacatcctgcagaaggtg
tggatcctgcgcaagttcatccacgatatggacgaggtcgaggcgatggaattcctgctc
gacaagctcaagtccacgaagaacaacgcggagttcttcgacatgatgcgacgtggcagc
tga
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