Ralstonia pseudosolanacearum RS 476: CDC45_06335
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Entry
CDC45_06335 CDS
T05645
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rpu
Ralstonia pseudosolanacearum RS 476
Pathway
rpu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDC45_06335 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpu03019
]
CDC45_06335 (rnr)
03016 Transfer RNA biogenesis [BR:
rpu03016
]
CDC45_06335 (rnr)
Enzymes [BR:
rpu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CDC45_06335 (rnr)
Messenger RNA biogenesis [BR:
rpu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CDC45_06335 (rnr)
Transfer RNA biogenesis [BR:
rpu03016
]
Prokaryotic type
tRNA degradation factors
CDC45_06335 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
HTH_11
WHD_RNase_R
DUF6071
Motif
Other DBs
NCBI-ProteinID:
AST26846
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All DBs
Position
1298214..1300805
Genome browser
AA seq
863 aa
AA seq
DB search
MNQPTYPIPSREEILGVLRTSGSPLSAADIAKALSVTRKEHDGFIKRLTAMERDGQLELN
RKGRYELAHQPNFIEGRVVGHRDGYGFFIRDDGEPDIFLPEREMQKAMHGDRALVRVIGY
DRRGRSEGQIVEMLERANRYVIGRLLSESGTLVVAPEDKRLGRDILIAPKGQGKAKVGQV
VSVEILEYPDRYVQPIGRVVEVLGEIDDPGMEIEIAVRKYGVPHEFSEATLRESEALPDV
VRESDLAGRIDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRSKGWRLVVAIADVSHYVQP
GKSLDVDAIDRATSVYFPRRVIPMLPEKLSNGLCSLNPEVDRLCMVCDAVITAKGQIKAY
QFYPAVMHSAARLTYNEVWSILSNVKGPEAAKRAPLVPHLQDLYELFQVLLKARRERGAI
DFDTTETYIVCNAQGKIEQILPRTRNDAHRLIEECMLTANVCAAEMLERYKHPALYRVHA
GPTEEKLQALRAFLKTSGLTLGGGDKPQAADYAELMEKIIARPDAPMLQTMLLRSMQQAV
YSPDNVGHFGLAYEAYAHFTSPIRRYPDLLVHRAIKAVLQHSRYVPALASGVQLNSGLSP
KARRMQAEADKATPAAVASKAKVEAIWHELGVHCSANERRADEASRDVEAWLKCYFMRDK
LGNEFSGTVSAVTSFGIFVQLDELYVEGLVHVTELGSDYFQFDEARNELRGERTGIRYRL
TDRVRVQLLRVDLDARKMDFRLIQEPSVKALRPAKVAGVPAEGAPRQPAVATPAPPVGRK
KPRQLAALLGGTAKPEESFDETLDRVFEEQPVFEPGPRALPPGHAHAKPTRKKPAARTTK
PKTGGKTATRKAPGKTVRSRKGR
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
ttgaatcaaccgacttatccgatcccgagccgcgaggaaatcctcggtgtgctgcgcacg
tcgggatctccgctgtctgccgccgacatcgcaaaggcgctgtctgtcacgcgcaaggag
catgatggcttcatcaagcggctgaccgcgatggagcgggacggccagctcgaactcaac
cgcaaggggcgctacgaactggcgcaccagcccaacttcatcgaaggccgcgtggtcggc
caccgggacggctacggcttcttcatccgcgacgacggcgagcccgacatcttcctgccc
gagcgcgaaatgcagaaggccatgcatggcgaccgcgcactggtgcgcgtgatcggctat
gaccgccgcgggcgttcggaagggcagatcgtcgagatgctggagcgggccaaccgctat
gtgatcggccggctgctgtcggagagcggcacgctggtggtggcgcccgaggacaagcgc
ctgggccgcgacatcctgatcgcgcccaaggggcagggcaaggccaaggtcggccaggtg
gtgagcgtggagatcctggaatatccggaccgctacgtgcagccgatcggtcgcgtggtc
gaggtgttgggcgaaatcgacgaccccggcatggagatcgagatcgcggtgcgcaagtat
ggcgtgccgcacgagttctccgaggccacgctgcgcgagtcggaggcgctgcccgatgtg
gtgcgcgaatccgatctggccggccggatcgatctgcgcgacgtgccgctggtcaccatc
gacggcgaggacgcgcgcgacttcgacgacgcggtctattgcgagccggtcaagatcggc
cgcagcaagggttggcgcctggtcgtggcgatcgccgacgtgtcgcactacgtgcagccg
ggcaagtcgctcgacgtggacgcgatcgaccgcgccacgtcggtctatttcccgcggcgc
gtgatcccgatgctgccggagaagctgtccaacggcctgtgctcgctgaatccggaggtg
gatcgcctgtgcatggtgtgcgatgcggtgatcacggccaaggggcagatcaaggcgtat
cagttctacccggccgtgatgcactcggccgcgcgcctgacctacaacgaggtctggtcg
atcctgtccaacgtgaaggggccggaggcggccaagcgcgcgccgctggtgccgcatctg
caggatctgtacgaactgttccaggtcttgctgaaagcccgccgcgaacggggcgccatc
gacttcgacaccaccgagacctatatcgtctgcaatgcgcagggcaagatcgaacagatc
ctgccgcgcacccgcaacgacgcgcaccggctgatcgaggagtgcatgctgaccgccaac
gtctgcgcggcggagatgctggagcgctacaagcatccggcgctgtatcgcgtgcatgcc
ggtccgaccgaagagaagctgcaggcgctgcgcgccttcctcaagaccagcggcctgacg
ctgggcggcggcgataagccccaggcggcggactatgccgagctgatggaaaagatcatc
gcgcgccctgacgcgccgatgttgcagaccatgctgctgcgctcgatgcagcaggcggtc
tacagccccgacaacgtcggccacttcggcctggcgtacgaggcctacgcgcacttcacc
agcccgatccgccgctatccggacctgctggtgcaccgggccatcaaggccgtcctgcag
cattcgcgctatgtgccggcgctggcgtcgggcgtgcagctcaacagcgggctttcgccc
aaggcgcgccgcatgcaggccgaggccgacaaggccacgccggccgccgtcgccagcaag
gccaaggtcgaggcgatctggcacgagctgggcgtgcattgctcggccaacgagcgccgc
gccgacgaggcttcgcgcgacgtggaggcctggctcaagtgctacttcatgcgcgataag
ctgggcaatgagttctccggcacggtcagcgcggtcacctcgttcggcatcttcgtgcag
ctcgacgagctgtacgtggagggcctggtgcacgtgaccgagctgggcagtgactacttc
cagttcgacgaggcccgcaatgagctgcgcggcgagcgtaccggcatccgctatcgcctg
accgatcgcgtgcgcgtgcagttgctgcgcgtcgatctggatgcgcgcaagatggatttc
cggctgatccaggagccgtcggtcaaggcgttgcgtccggccaaggtggccggcgtgccg
gcggagggcgcgccgcgccagccggccgtcgccacgcccgcgccgccggtggggcgcaag
aagccgcgccagctggcagccttgctgggcggtacggccaagccggaggagtcgttcgac
gagacgctggaccgcgtgttcgaggagcagccggtgttcgagccggggccgcgcgcgctg
ccgccgggccatgcgcatgccaagccgacgcgcaagaagccggccgcgcgcacgaccaag
cccaagaccggcggcaagaccgcgacgcgcaaggcgccgggcaagaccgtgcggtcgcgc
aaggggcggtga
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