Ralstonia pseudosolanacearum RS 476: CDC45_11280
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Entry
CDC45_11280 CDS
T05645
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rpu
Ralstonia pseudosolanacearum RS 476
Pathway
rpu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDC45_11280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpu03019
]
CDC45_11280
Enzymes [BR:
rpu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CDC45_11280
Messenger RNA biogenesis [BR:
rpu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CDC45_11280
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Fe-ADH
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AST27749
LinkDB
All DBs
Position
complement(2395046..2396533)
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AA seq
495 aa
AA seq
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MNTETTSAAPSSDPVTFDTFGLHPDILRALAESGYTRATPIQAAAIPVVIAGRDVMGAAQ
TGTGKTAGFSLPIIQNLLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKHTAL
RSAVVFGGVDMNPQTEQLRRGVEVLVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDM
GFLPDLQRIINLLPAHRQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQVI
YTVPDGHKQAALVHLLRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKT
QTERMQTLEAFKQGTVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAG
ASGDALSLFAPGDERLLADIEKLIKRNLPRETLTDFDPTGEQARERERRERDERRNRTEI
RRARERDERNGARVLDHTVVRPPFRPSEDPFFSRPYESNVPAEAAEAAKPAPAGGHPRSA
KRPIAALLGGVPRKR
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgaacactgagacaacgtctgcagcaccgtccagcgatcctgtgacgttcgacacgttc
ggcctgcatcccgatatcctgcgggccctggccgagagcggctacacccgggccacgccc
atccaggccgccgcgattcccgtggtgatcgccggccgcgatgtgatgggcgcggcgcag
accggtacgggcaagaccgccggcttctcgctgccgatcatccagaacctgctgccggac
gccaacaccagcgcctcgccggcgcgccaccccgtgcgggcgctgatcctcacgcccacg
cgcgagctggccgaccaggtctacgacaacgtcgccaagtacgcgaagcacacggcgctg
cgcagcgcggtcgttttcggcggtgtcgacatgaatccgcagaccgagcagctgcgtcgc
ggcgtggaggttctcgtcgccacgccgggccgcctgctcgatcacgtgcagcagcgcagc
gtgaacctgtcgcaggtgcgcatgctggtgctggacgaagccgaccgcatgctcgacatg
ggcttcctgcccgacctgcagcgcatcatcaacctgctgccggcgcaccggcagacgctg
ctgttctcggccacgttctcgcccgagatcaagaagctggcagcgagctacctgcgccat
ccgcagaccatcgaagtggcgcgcagcaacgccaccgcagacaacgtccgccaggtcatc
tacaccgtgccggacggccacaagcaggcggcgctcgtgcacctgctgcgccagcgcgcc
gaacagggcctgccgagccagtgcatcgtgttttccaacagcaagatcggctgttcgcgc
ctggcgagggcgctcgagcgcgagaagatcaacgccaatgccatccacggcgacaagacc
cagaccgagcgcatgcagacgctcgaagcgttcaagcagggcacggtcgacgtgctggtc
gccaccgacgtggcggcgcgcggcctcgacatctcgcagatgccctgcgtgatcaacttc
gatctgccgttcaatgcggaagactatgtccatcgcatcggccgtaccggccgcgcaggc
gcttcgggcgatgcgctgtcgctgttcgccccgggcgatgaaaggctgctggccgacatc
gagaagctgatcaagcgcaatctgccgcgcgagacgctcaccgatttcgatccgaccggc
gaacaggcccgcgaacgcgaacgccgcgagcgcgacgagcgccgcaaccgcaccgagatc
cgtcgggcccgcgagcgcgatgagcgcaacggcgcccgggtgcttgaccataccgtggtg
cgcccgcccttccggccgtcggaggatccgttcttctcgcgcccgtacgagtcgaacgtg
cccgccgaggctgcggaggccgccaagccggcaccggccggcggtcacccgcgcagcgcc
aagcgcccgattgccgccctgctgggcggcgtgccgcgcaagcgctga
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