Ralstonia pseudosolanacearum RS 476: CDC45_11305
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Entry
CDC45_11305 CDS
T05645
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rpu
Ralstonia pseudosolanacearum RS 476
Pathway
rpu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rpu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CDC45_11305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpu03021
]
CDC45_11305
Transcription machinery [BR:
rpu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CDC45_11305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
KIND
GSH-S_ATP
Motif
Other DBs
NCBI-ProteinID:
AST27752
LinkDB
All DBs
Position
complement(2399827..2402313)
Genome browser
AA seq
828 aa
AA seq
DB search
MGQAGGKAAVPAKTGKAQPSKTAEISAAAKPAPRVKGAIQSSTSGKVSTSMSTSARPGGK
EAASVALKGKTTTVAKSKITEVESKESAASARAAKTGTARTSTAKPNKAADADTKRTVRE
AEAIPTPTSPAPRAEAAAEPKKRGRKPRAGAQADDESSTDVTEEFDEAPAAPAPKSDKQK
ARDRKAKEKALLKEFAATQQGGSEEELEARRQKLKALIKLGKSRGYLTYAEINDHLPDDM
VDAESMDTLVATLNDIGIAVYEQAPDAETLLLNDNAPSVTTEEEAEEEAEAALSTVDSEF
GRTTDPVRMYMREMGTVELLTREGEIEIAKRIEAGLKDMVMAISACPVTISEILAMGERV
ANDEAKIDEYIDGLIDPNADAAEAAQAGDEDEDFEDEDADESGDEEEDEDDDGSGSSAAS
ARQLEELKQAALAKFAIIGDQFEKMRRAFEKEGYKSKPYLKAQEAIQNELMTIRFTARNV
ERLCDTLRGQVDEVRKLERAILNIVVDKCGMSRGDFVSRFPGNETNLGWINTVVADGKPY
SAIVERNIPAVHELQQKLIDLQARVVLPLAELKDVNKKMSEGERRAREAKREMTEANLRL
VISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ
ARTIRIPVHMIETINKMNRISRQILQETGNEPDPATLAEKMEMPEDKIRKIMKIAKEPIS
METPIGDDDDSHLGDFIEDTNTLAPAEAALHGSMRGVVKDVLDSLTPREAKVLRMRFGIE
MSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGS
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
gtggggcaggcgggaggaaaggcagctgtgccggcaaaaacgggaaaagcccagccgagc
aagaccgccgagatttccgccgccgccaagccggcaccgcgcgtgaagggcgcgatccaa
tcttcaacctcaggcaaggtctcgacgtcgatgagcacgagcgccagacctggcggcaaa
gaagccgcttccgtcgcactcaagggtaagacaaccaccgtggcgaaatcgaagatcacc
gaagtcgagagcaaagagtccgctgccagcgcacgcgcagccaagaccggtaccgctcgt
accagcaccgcaaagccgaacaaggccgcggatgcagacaccaagcgcaccgttcgcgag
gcagaggccatccccaccccaacttctcctgcaccccgcgccgaggccgcggccgagccc
aagaagcgcggccgcaagccccgtgccggggcgcaggcagacgacgaaagcagcacggac
gtgactgaagaatttgacgaagcacccgccgctccggcacccaaatccgacaagcagaag
gcccgcgaccgcaaggccaaggaaaaagccctgctgaaggagtttgccgcaacgcagcaa
ggcgggtcggaagaagagctcgaggcacgccgccagaagctcaaggcgctgatcaagctg
ggcaaatcgcgcggctacctgacctacgccgaaatcaacgaccatctgcccgacgacatg
gtcgacgcagagtcgatggacacgctggtcgccacgctcaacgacatcggcatcgccgtg
tacgagcaggccccggacgccgagaccctgctgcttaacgacaacgcgccttccgtgacc
acggaagaagaggcggaagaggaagccgaagccgcgctgtccacggtcgactccgaattc
ggccgcacgaccgacccggtgcgcatgtacatgcgcgagatgggcacggtcgagctgctc
acccgcgaaggcgaaatcgagatcgccaagcgcatcgaggccggcctgaaggacatggtc
atggccatctcggcctgcccggtcaccatctccgagatcctcgccatgggcgagcgcgtg
gccaacgatgaggccaagatcgacgagtacatcgacggcctgatcgacccgaacgccgac
gccgccgaagccgcgcaggccggcgacgaggacgaagacttcgaggacgaagacgccgac
gagagcggcgacgaagaggaagacgaggacgacgacggctcgggcagctcggccgcatcc
gcgcgccagctcgaagagctcaagcaggccgcgctggcgaagttcgccatcatcggcgac
cagttcgagaagatgcgccgcgccttcgagaaggaaggctacaagtccaagccgtacctg
aaggcgcaggaagccatccagaacgagctgatgacgatccgcttcacggcacgcaatgtc
gagcgcctgtgcgacacgctgcgcggccaggtcgacgaggtgcgcaagctcgagcgcgcg
atcctgaacatcgtggtcgacaagtgcggcatgtcgcgtggcgatttcgtctcgcgtttc
cctggcaacgaaaccaacctcggctggatcaacacggtggtcgccgacggcaagccgtac
agcgccatcgtcgagcgcaacatcccggccgtgcacgagctgcagcagaagctgatcgac
ctgcaggcgcgcgtggtgctgccgctggccgagctcaaggacgtcaacaagaagatgtcc
gaaggcgagcgccgcgcccgcgaggccaagcgcgagatgaccgaggccaacctccgtctg
gtgatctccattgccaagaagtacaccaaccgcggcctgcagttcctcgacctgatccag
gaaggcaacatcggcctgatgaaggcggtggacaagttcgaataccgccgcggctacaag
ttctcgacgtacgccacgtggtggatccgccaggccatcacgcgctcgatcgccgaccag
gcgcgcaccatccggattccggtgcacatgatcgagacgatcaacaagatgaaccgcatc
tcgcgccagatcctgcaggaaaccggcaacgagccggatccggcgacgctggccgagaag
atggagatgccggaagacaagatccgcaagatcatgaagatcgccaaggagccgatctcc
atggaaacgccgatcggtgacgacgacgactcccatctgggcgacttcatcgaggacacc
aacacgctggcaccggccgaagcggcgctgcatggctccatgcgcggcgtggtgaaggac
gtgctcgactcgctgacgccgcgcgaagccaaggtgctgcgcatgcgcttcggcatcgag
atgagcacggaccacacgctggaagaggtcggcaagcagttcgacgtgacccgcgagcgt
atccgccagatcgaagcgaaggcgctgcgcaaactgcgccacccgagccgttcggacaag
ctgaagagcttcctcgaggggagctga
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