Ralstonia pseudosolanacearum RS 476: CDC45_15460
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Entry
CDC45_15460 CDS
T05645
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rpu
Ralstonia pseudosolanacearum RS 476
Pathway
rpu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rpu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CDC45_15460 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpu03021
]
CDC45_15460 (rpoC)
03400 DNA repair and recombination proteins [BR:
rpu03400
]
CDC45_15460 (rpoC)
Enzymes [BR:
rpu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CDC45_15460 (rpoC)
Transcription machinery [BR:
rpu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CDC45_15460 (rpoC)
DNA repair and recombination proteins [BR:
rpu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CDC45_15460 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
Apocytochr_F_C
Peptidase_M23
BSH_RND
Motif
Other DBs
NCBI-ProteinID:
AST28525
LinkDB
All DBs
Position
complement(3259152..3263381)
Genome browser
AA seq
1409 aa
AA seq
DB search
MKALLDLFRQVQQEEQFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELAAPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAFVVVEPGMTPLKKSQIMSEDDYLAKCDEYGEGEFVAL
MGAEGIRELLRGIDIEKQIETIRAELQATGSEAKIKKFAKRLKVLEAFQRSGIKPDWMIL
EVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRML
QEAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGP
TLKLHQCGLPKLMALELFKPFIFHKLETMGIATTIKAAKKEVESQTPVVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQME
ARTLMLASNNVLFPANGDPSIVPSQDVVLGLYYTTRDKINGRGEGMTFADISEVIRAYEN
KEVELASRVNVRITEYDLVNPEADGDARFAPKITLQATTVGRAILSEILPKGLPFSVLNK
PLKKKEISRLINTAFRKCGLRETVIFADKLLQSGFRLATRAGISIAIDDMLVPPAKEKII
SEAAAKVKEYDKQYMSGLVTDQERYNNVVDIWGAAGDQVGKAMMEQLQTEDVVDRHGKTV
KQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFI
STHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVIEA
LRDRILGRVVVNDVVNPETQETAIEAGTLLDEDLVELIDSIGVDEVKVRTPLTCDTRYGL
CAKCYGRDLGRGVLVNSGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKA
TGTVRFTATMRYVTNAKGEQIVISRSGEALITDDHGRERERHKIPYGATLLVHDGQSIKA
GTQLATWDPLTRPIISEYSGTIKFENVEEGVTVAKQMDEVTGLSTLVVIDAKRRTSASKG
IRPQVKLLDSSGAEVKIPGTDHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRD
ITGGLPRVAELFEARSPKDAAVLAEVTGTTSFGKDTKGKQRLVITDLDGNAHEFLIAKEK
QVLVHDGQVVNKGEMIVEGPADPHDILRLKGVEELATYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQIVDVGDTKFIPGEQVERSELLDENDKVIAEGKRPATYENLLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKVDDLRGLKENVIVGRLIPAGTGLAYHRARKAKEA
ADRDRAAAIAEEEAASIFETPAVQQEGDA
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattgctcgacctattccgtcaggtacagcaagaagagcagttcgacgcgatc
aagatcggcctcgcatcgcccgagaaaatccgttcgtggtcgttcggcgaggtcaagaag
cctgagaccatcaactaccgcacgttcaagccggagcgtgacggcctgttctgcgccaag
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgtggtgtgatctgcgagaagtgcggcgtggaagtgacgctggccaaggtgcgccgcgag
cgcatgggccacatcgaactggctgcgccgaccgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcgttcgtggtggtcgaaccgggcatgacgccgctcaagaagagccagatcatg
tcggaagacgattacctggccaagtgcgacgagtacggcgagggtgaattcgtcgccctg
atgggtgccgagggcatccgtgaactgctgcgcggcatcgacatcgagaagcagatcgag
accatccgtgccgagctgcaggccacgggctcggaagccaagatcaagaagttcgccaag
cgcctgaaggtgctcgaggcgttccagcgttcgggcatcaagccggactggatgatcctc
gaagtgctgccggtgctgccgcccgagctgcgtccgctggtgccgctggacggcggccgt
ttcgccacgtcggacctgaacgacctgtatcgccgagtgatcaaccggaacaaccgtctg
aagcgtctgctcgagctgaaggcgccggagatcatcgtgcgcaacgaaaagcgcatgctg
caggaagcggtggactcgctgctggacaacggccgtcgcggcaaggcgatgaccggcgcc
aacaagcgtccgctgaagtccctggccgaaatgatcaagggcaagggcggccgtttccgt
cagaacctgctgggcaagcgcgtggactactcgggccgttcggtcatcgtggtgggcccg
acgctcaagctgcaccagtgcggcctgcccaagctgatggcgctcgagctgttcaagccc
ttcatcttccacaagctggaaacgatgggcatcgccaccaccatcaaggcggcgaagaag
gaagtggaaagccagacgccggtggtgtgggacatcctcgaagaggtgatccgcgagcac
ccggtgatgctgaaccgtgcgccgacgctgcaccgcctgggcatccaggcgttcgagccg
gtgctgatcgaaggcaaggccatccagctgcacccgctggtctgcgcggcgttcaacgcc
gacttcgacggtgaccagatggctgtccacgttccgctgtcgctcgaagcgcagatggaa
gcgcgcacgctgatgctggcgtcgaacaacgtactgttcccggccaacggcgatccgtcg
atcgtgccgtcgcaggacgtggtgctgggtctgtactacacgacccgcgacaagatcaac
ggccgcggcgagggcatgaccttcgccgacatctcggaagtgatccgcgcctacgagaac
aaggaagtcgagctggcttcgcgcgtgaacgtgcggatcaccgagtacgacctggtgaac
ccggaagccgacggcgacgcccgtttcgcgccgaagatcacgctgcaggccaccacggtc
ggccgcgcgatcctgtcggagatcctgccgaagggtctgccgttctcggtgctgaacaag
ccgctgaagaagaaggaaatctcgcgcctgatcaacacggcgttccgcaagtgcggtctg
cgcgagacggtgatcttcgccgacaagctgctgcagtcgggcttccgcctggccacgcgc
gctggcatctcgatcgccatcgacgacatgctggtgccgccggccaaggagaagatcatc
tccgaggctgccgccaaggtgaaggaatacgacaagcagtacatgtcgggtctggtgacg
gatcaggagcgctacaacaacgtcgtggacatctggggcgctgccggcgaccaggtgggc
aaggcgatgatggagcagctccagaccgaagacgtggtcgaccgccacggcaagaccgtc
aagcaagagtcgttcaactccatctacatgatggccgactcgggcgcacggggctccgcg
gcgcagatccgtcagctggccggcatgcgtggcctgatggccaagccggacggctcgatc
atcgaaacgccgattaccgcgaacttccgcgaaggcctgaacgttctgcagtacttcatc
tcgacccacggtgcgcgtaagggtctggctgatacggcactgaagaccgcgaactcgggt
tacctgacccgtcgtctggtcgacgtgacgcaggatctggtggtggtggaagacgattgc
ggcacctccaacggcgtggccatgaaggccctggtcgaaggcggtgaagtgatcgaagcc
ctgcgcgaccgtatcctgggccgcgtggtcgtcaacgacgtggtgaacccggaaacgcag
gaaaccgcgatcgaagccggcacgctgctggacgaagacctggtcgagctgatcgattcg
atcggcgtggacgaggtcaaggtccgcacgccgctgacctgcgacacgcgctacggcctg
tgcgccaagtgctacggccgcgatctgggccgcggcgtgctggtgaactcgggcgaagcg
gtgggcgtgattgccgcccagtcgatcggcgagccgggcacgcagctgaccatgcgtacg
ttccacatcggtggtgcggcatcgcgtgcggcagtggcatcgagcgtggaagccaaggcg
accggtaccgtgcgcttcacggcgaccatgcgttacgtcaccaacgcgaagggcgagcag
atcgtcatctcgcgttcgggcgaggcgctgatcaccgacgaccacggccgcgagcgtgag
cgccacaagatcccgtacggcgcgacgctgctggtgcacgatggccagtccatcaaggcc
ggcacgcagctcgccacgtgggatccgctgacgcgtccgatcatttcggagtactcgggc
accatcaagttcgagaacgtcgaagagggcgtgaccgtcgccaagcagatggacgaagtg
accggcctgtcgacgctggtggtgatcgacgccaagcgccgcacctcggcctcgaagggc
atccgtccgcaggtgaagctgctcgactcgtcgggcgccgaagtgaagatcccgggcacg
gaccactccgtgaccatcggcttccaggtcggcgcgctgatcaccgtgaaggacggtcag
caggtgcatgtgggtgaagtgctggcccgtatcccgaccgaatcgcagaagacgcgtgac
attaccggtggtctgccgcgcgtggccgagctgttcgaagcgcgttcgccgaaggacgcc
gccgtgctggcggaagtcaccggcacgacctcgttcggcaaggacaccaagggcaagcag
cgcctggtgatcacggacctcgacggcaatgcccacgagttcctgatcgccaaggaaaag
caggtgctggtgcacgacggccaggtggtcaacaagggcgagatgatcgtcgaaggcccg
gccgacccgcacgacatcctgcgcctgaagggcgtggaagagctggcgacctacatcgtc
gacgaagtgcaggacgtgtaccgtctgcagggcgtgaagatcaacgacaagcacatcgaa
gtgatcgtgcgtcagatgctgcgccgcgtgcagatcgtcgatgtgggcgacaccaagttc
atcccgggtgaacaggtggagcgctcggagctgctcgacgagaacgacaaggtcatcgcc
gaaggcaagcgtccggctacctacgagaacctgctgctgggtatcacgaaggcgtcgctg
tcgaccgacagcttcatctcggcggcgtcgttccaggaaaccacgcgcgtcctcaccgaa
gccgccatcatgggcaaggtggacgacctgcgcggtctgaaggaaaacgtcatcgtcggc
cgcctgatcccggccggtaccggtctggcttaccaccgtgcccgcaaggccaaggaagcc
gccgaccgcgaccgcgccgctgcgattgcggaagaagaagccgcctcgatcttcgagacg
cccgccgtccagcaggaaggcgacgcgtaa
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