Ralstonia pseudosolanacearum RS 476: CDC45_15465
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Entry
CDC45_15465 CDS
T05645
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rpu
Ralstonia pseudosolanacearum RS 476
Pathway
rpu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rpu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CDC45_15465 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpu03021
]
CDC45_15465 (rpoB)
03400 DNA repair and recombination proteins [BR:
rpu03400
]
CDC45_15465 (rpoB)
Enzymes [BR:
rpu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CDC45_15465 (rpoB)
Transcription machinery [BR:
rpu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CDC45_15465 (rpoB)
DNA repair and recombination proteins [BR:
rpu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CDC45_15465 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
AST28526
LinkDB
All DBs
Position
complement(3263500..3267606)
Genome browser
AA seq
1368 aa
AA seq
DB search
MAYSFTEKKRIRKSFAKRATVHQVPFLLATQIQSYAQFLQEHASVAQRKSEGLQAAFNAI
FPIVSHNGLARMEFVSYHLSNPPFDVKECQQRGLTFHSALRAKVRLIINDRENPTKVKEI
KEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARII
PYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKSIGLTPEQILAHFFVFDNFTLKSDGA
LMEFVPERLRGEVARFDISDKNGKVVVEKDKRINAKHIRDLDAAGTKLISVPEDYLLGRV
LAKNIVDPDTGEVLANANDELTEGVLEKLRDAGVKEIQTLYTNDLDQGPYMSQTLRTDDT
VDQTAARIAIYRMMRPGEPPTEDAVEALFQRLFYSEDSYDLSRVGRMKVNSRLNRSEGTG
PMVLTDDDILDTIKLLVNLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRVERAVK
ERLGQAETENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEVTHKRRISALGPG
GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQLNDYGFLETPYRKVEN
SKLTDQVDYLSAIEEGKYVVAQANATVDKDGNLVDELVSAREGSERETRMVTPDRVQYID
VAPSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRADKPLVGTGVERTVAVDSGT
AVQATRGGLVDYVDANRVVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPMVKVG
DIVARGDVIADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYTSIHIE
ELSVVARDTKLGPEEITRDISNLAEAQLARLDESGITYIGAEVEAGDVMVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGVTRDKRAQSIIDEELK
RYRLDLNDQLRIVEGDAFQRLERLLVGKVVNGGPKKLAKGTALTKEYLADLDKWHWFDIR
PSDDDVATQLEAVKEAIEQKRHDFDLAFEEKRKKLTQGDELPPGVIKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSKITPIEDMPYMADGTPADIVLNPLGVPSRMNVGQILETHLGWAA
RGLGERIGNMLKAQAKAAEMRKLLGQIYNESGKVEDLDSLSDAEVLELAENLKKGVPFAT
PVFDGAHEDEIRRMLDLAYPEDIAKEKGLTASKQQVTLFDGRTGEAFERPVTLGVMHMLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVNGRTKVYENIVKGEHSIDAGMPESFNVLVKEIRSLGIDIDLERN
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atggcgtacagctttaccgagaaaaagcgtattcgcaagagtttcgcgaagcgcgcaacg
gtccatcaggttcccttcctgcttgccacccagattcaatcgtatgcccagttcttgcag
gagcatgcgtccgtcgcacagcgaaagagcgaaggcctgcaagcggcgttcaacgccatc
ttccccatcgtgtcgcacaatggtctggcacgcatggaattcgtgtcgtaccacctgtcc
aacccgccgttcgacgtcaaggaatgtcaacagcgcggtctgactttccactcggcgctg
cgcgcgaaagtgcgcctgatcatcaacgaccgcgagaacccgaccaaggtcaaggagatc
aaggagcaggaagtctacatgggcgagatcccgctcatgacgtcgaccggttcgttcgtg
atcaacggcacggaacgcgtgatcgtgtcccagctgcaccgctcgccgggcgtgttcttc
gagcacgacaagggcaagacgcatagctcgggcaagctgctgttctcggcgcgcatcatt
ccctaccgcggctcgtggctggacttcgaattcgatccgaaggacatcctgtacttccgc
gtcgaccgccgccgcaagatgccggtgacgatcctgctgaagtcgatcggcctgacgccg
gaacagatcctggcgcacttcttcgtcttcgacaacttcacgctcaagagcgacggcgcg
ctgatggagttcgtgcccgagcgcctgcgcggcgaagtcgcccgcttcgacatctccgac
aagaacggcaaggtcgtcgtcgagaaggacaagcgcatcaacgccaagcacatccgtgac
ctggatgccgccggcaccaagctgatcagcgtgccggaagactacctgctgggccgtgtg
ctggcgaagaacatcgtcgacccggataccggcgaagtgctggccaacgccaacgacgag
ctgaccgaaggcgtgctcgagaagctgcgtgacgcgggcgtgaaggaaatccagacgctg
tacaccaacgatctggaccaggggccgtacatgtcgcagacgctgcgcacggacgacacg
gtcgaccagaccgccgcccgtatcgccatctaccgcatgatgcgcccgggcgagccgccg
accgaggacgccgtcgaagcgctgttccagcgcctgttctacagcgaagactcgtacgat
ctgtcgcgcgtgggccgcatgaaggtcaacagccgtctgaaccgctcggagggcaccggc
ccgatggtgctgacggatgacgacatcctcgacaccatcaagctgctggtgaacctgcgc
aacggcaagggcgaagtggacgacatcgaccacctcggcaaccgtcgcgtgcgttgcgtc
ggcgaactggcggaaaaccagttccgcgccggtctgtcgcgcgtcgagcgcgcggtcaag
gagcgcctcggccaggccgagacggaaaacctgatgccgcacgacctgatcaactcgaag
ccgatctcgtcggcgattcgcgagttcttcggttcgtcgcagctgtcgcagttcatggac
cagaccaacccgctgtcggaagtgacccacaagcgccggatctcggcactgggcccgggc
ggtctgacgcgcgagcgcgcgggcttcgaagtccgcgacgtgcacccgacccactacggc
cgcgtgtgcccgatcgaaacgccggaaggtccgaacatcggtctgatcaactcgctggca
ctgtacgcgcagctcaacgactacggcttcctggaaaccccgtaccgcaaggtcgagaac
agcaagctgaccgaccaggtcgactacctgtcggccatcgaggaaggcaagtacgtggtg
gcgcaggccaacgcgacggtggacaaggacggcaacctggttgacgaactggtctccgca
cgtgaaggcagcgagcgtgaaacgcgtatggtcacgccggaccgcgtgcaatacatcgac
gtggcgccgtcgcagatcgtgtcggccgcagcttcgctggtgccgttcctggagcacgat
gacgcgaaccgtgcactgatgggcgcaaacatgcagcggcaggccgtgccttgcctgcgt
gcggacaagccgctggtcggtaccggcgtggaacgcaccgtggcggttgactcgggtacc
gccgtgcaggccacccgtggcggcctggtcgactacgtcgacgccaaccgcgtggtgatc
cgcgtgaacgatgacgaagccgtggcgggtgaagtcggcgtcgacatctacaacctgatc
aagtacacgcgttcgaaccagaacacgaacatcaaccagcgtccgatggtcaaggtgggc
gatatcgttgcccgcggcgacgtgatcgccgatggcgcctcgaccgacctgggcgagctc
gcgctcggccagaacatgctggtcgcgttcatgccctggaacggctacaacttcgaggat
tcgatcctgatctcggagcgtgtcgtggctgaagaccgttacacctcgatccacatcgag
gaactgtcggtcgtcgcccgcgacaccaagctcggaccggaagaaatcacgcgcgacatc
tcgaacctggctgaagcccaactggcgcgcctggacgaatcgggcatcacgtacatcggc
gcggaagtcgaagccggcgacgtgatggtcggcaaggtcacgcccaagggcgagacccag
ctgacgccggaagagaagctgctgcgtgcgatcttcggcgagaaggcgtccgacgtgaag
gacacctcgctgcgcgtgccttcgggcatgagcggtaccgtgatcgacgtgcaggtcttc
acgcgtgaaggcgtgacgcgcgacaagcgcgcccagtcgatcatcgacgaagagctgaag
cgttaccgcctggacctgaacgaccagctgcgtatcgtggaaggcgatgccttccagcgt
ctggagcgtctgctggtgggcaaggtcgtcaatggcggcccgaagaagctggccaagggc
acggcactcacgaaggaatacctggccgacctcgacaagtggcactggttcgacatccgc
ccgtcggatgacgacgtcgcgacccagctcgaagccgtgaaggaagccatcgagcagaag
cgccacgacttcgacctcgcgttcgaagagaagcgcaagaagctcacgcagggcgacgaa
ctgccgccgggcgtgatcaagatggtcaaggtgtacctggccgtgaaacgtcgcctgcag
cctggcgacaagatggccggccgtcacggcaacaagggcgtggtgtcgaagatcaccccg
atcgaagacatgccctacatggccgacggcacgcctgccgacatcgtgctgaacccgctg
ggcgtgccttcgcggatgaacgtgggccagattctcgagacccacctgggctgggccgcg
cgtggcctgggcgagcgcatcggcaacatgctcaaggcgcaagccaaggccgccgagatg
cgcaagctgctgggccagatctacaacgaaagcggcaaggtggaagacctcgatagcctg
tccgacgcggaagtgctggaactggccgagaacctgaagaagggcgtgccgttcgcgacg
ccggtgttcgacggtgcgcatgaggacgaaatccgccgcatgctggacctcgcctatccg
gaagacatcgcgaaggagaagggcctgacggcttccaagcagcaggtcacgctgttcgac
ggccgcaccggtgaagcgttcgagcgtccggtcacgttgggtgtgatgcacatgctgaag
ctgcaccacttggtcgacgacaagatgcacgcgcgttcgaccggcccgtactcgctggtg
acgcagcagccgctgggcggtaaggcccagttcggtggccagcgtttcggtgagatggaa
gtgtgggcgctggaagcgtacggcgcgtcctacgtgctgcaggaaatgctgaccgtgaag
tcggatgacgtgaacggccggaccaaggtgtacgagaacatcgtcaagggcgagcactcg
atcgatgccggcatgccggaatcgttcaatgtgctggtgaaggaaatccgctcgctgggt
atcgacatcgacctcgagcgcaactaa
DBGET
integrated database retrieval system
