Agrobacterium pusense CFBP5875: CFBP5875_00045
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Entry
CFBP5875_00045 CDS
T06598
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
rpus
Agrobacterium pusense CFBP5875
Pathway
rpus02020
Two-component system
rpus02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rpus00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CFBP5875_00045 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CFBP5875_00045 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpus03021
]
CFBP5875_00045 (rpoN)
Transcription machinery [BR:
rpus03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CFBP5875_00045 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_38
HTH_23
HTH_Crp_2
2Fe-2S_thioredx
Fe_dep_repress
HTH_24
HU-DNA_bdg
Arg_repressor
Crp
Motif
Other DBs
NCBI-ProteinID:
QCL83109
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All DBs
Position
circular:complement(7526..9076)
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AA seq
516 aa
AA seq
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MALSASLLLRQNQSLVMTPQLMQSIQLLQMTHFELTQFIAQEVERNPLLEIAANDGDLSN
DMPAEADNFGDSDGDGAGKSPSVTADSEDWYGDRAANLGEQLDTSFENVFPDDGEPRKAD
APELASQWKSMPGQESGESYDLDDFVAAKQSLGDHLSQQLPLSISSPEDRMIADVLIGQL
DETGYIAADAVDDIAERLGAAPSTVERVLKTLQGFDPPGVFSRSLSECLAIQLAQKDRLD
PAMRAFIDNLELLAKRDFASLKKLCGVDEEDLLDMLAEIRTLNPRPGAGYDSAVSETIVP
DIIVRPSSSGGWLVEINPETLPRVLINQSYFAEVSKHKARAGEDQDFLAECMQTAHWLTR
SLDQRARTIMKVATEIVRQQDAFLLSGVDHLRPLNLKTVADAIKMHESTVSRVTSKKYML
TPRGLFELKYFFSVSISAVEGGDSHSAEAVRHRIKAMIAQEAADAVLSDDDIVDNLKKNG
IDLARRTVAKYREAMNIPSSVQRRREKKALARLSAF
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggcattgtctgccagccttttgctgcgtcaaaaccagtctctcgtgatgacaccgcaa
ctgatgcagtccatccagctgcttcagatgacgcatttcgagttgacgcagtttatcgcg
caggaggtggaacgtaatccgctgctggaaattgcggcaaacgatggcgatttgagcaat
gacatgccggcggaagccgacaatttcggcgacagcgatggtgacggcgcgggaaaatcc
cccagcgtgaccgcggatagtgaagactggtacggggatcgcgccgcgaatcttggcgag
caactcgacacgagcttcgaaaacgtctttcccgacgatggcgagccgagaaaggccgat
gcgcccgaactggcgagccagtggaaatcgatgccgggccaggaatccggcgagagttac
gatctcgatgacttcgtcgctgcaaaacagagcctgggcgaccatctcagtcagcaattg
ccgctctccatctcttcccccgaagacaggatgatcgccgatgtgcttatcggccaactc
gatgagaccggctatatcgccgcagacgctgtcgacgacatcgccgagcggctgggagcg
gctccctcgactgtcgagcgggtcttgaagacactccagggcttcgatcctcccggcgta
ttttcacgttcactgagcgagtgtctggcgatccagctcgcgcagaaggaccggctcgac
ccggccatgcgggctttcatcgacaatctcgagcttctggcgaagcgggatttcgcctcc
ttgaagaaactctgtggggtcgatgaagaagacctgctcgacatgctggcggaaatccgc
acgctcaatccacgccccggtgcaggctacgattcagcggtttcggagaccatcgttccc
gatatcatcgttcgtccctcctcttccggcggctggctggtggaaatcaatcccgagacc
ctgccacgcgtgctcatcaaccagagctatttcgccgaagtctcgaaacacaaggctcgc
gcgggagaggaccaggactttctggctgaatgcatgcagaccgcccattggctgacccgt
agcctcgaccagcgcgcccggacgatcatgaaggttgcgacggagatcgtgcgtcagcag
gatgcctttctcctcagtggcgtggatcacctgcggccgctgaacctgaagacggttgcg
gacgccatcaagatgcacgaatccaccgtcagccgcgtgacatcaaagaaatacatgctg
acgccacgcgggctgttcgagctcaaatatttcttcagcgtatcaatcagcgctgtggaa
ggcggtgacagccattcagcggaagcagtccgtcaccgcatcaaggccatgattgcgcag
gaagcagctgatgcggtgctttccgacgacgatatcgtagacaatctaaagaagaacggt
atcgatctcgcccgccgcaccgtcgccaaatatcgggaggcgatgaacatcccctcctcc
gtgcagagacgccgggaaaagaaggctcttgccaggttgtccgccttctga
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