Agrobacterium pusense CFBP5875: CFBP5875_00070
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Entry
CFBP5875_00070 CDS
T06598
Name
(GenBank) integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
rpus
Agrobacterium pusense CFBP5875
Brite
KEGG Orthology (KO) [BR:
rpus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpus03032
]
CFBP5875_00070
03036 Chromosome and associated proteins [BR:
rpus03036
]
CFBP5875_00070
03400 DNA repair and recombination proteins [BR:
rpus03400
]
CFBP5875_00070
DNA replication proteins [BR:
rpus03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
CFBP5875_00070
Chromosome and associated proteins [BR:
rpus03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
CFBP5875_00070
DNA repair and recombination proteins [BR:
rpus03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
CFBP5875_00070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_1
HU-CCDC81_euk_2
HU-CCDC81_bac_2
Regnase_1_C
Motif
Other DBs
NCBI-ProteinID:
QCL83113
LinkDB
All DBs
Position
circular:12505..12807
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AA seq
100 aa
AA seq
DB search
MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS
GRNPRTGESVFVEEKWVPFFKTGKELRERLNPGMGDEEDD
NT seq
303 nt
NT seq
+upstream
nt +downstream
nt
gtgatcaaatctgaactggtgcagatcgttgctgcgcgtaacccgcacctttatcaccgt
gacgtggaaaacatcgtcaatgcggtgctggatgaaatcaccgacgctctggcggcagga
aatcgtgttgagctccgcggttttggcgcgttttcggtgaaaaaccgtccgtcgcgctcg
ggccggaacccgcgcacgggtgagtcggttttcgtcgaggaaaaatgggtgcccttcttc
aagacgggtaaggaactgcgtgaacgcctgaaccccggaatgggtgacgaagaggacgat
tga
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