Agrobacterium pusense CFBP5875: CFBP5875_05970
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Entry
CFBP5875_05970 CDS
T06598
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
rpus
Agrobacterium pusense CFBP5875
Pathway
rpus02024
Quorum sensing
rpus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFBP5875_05970 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
CFBP5875_05970 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpus03019
]
CFBP5875_05970 (hfq)
03036 Chromosome and associated proteins [BR:
rpus03036
]
CFBP5875_05970 (hfq)
Messenger RNA biogenesis [BR:
rpus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
CFBP5875_05970 (hfq)
Chromosome and associated proteins [BR:
rpus03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
CFBP5875_05970 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
DUF3285
Motif
Other DBs
NCBI-ProteinID:
QCL84145
LinkDB
All DBs
Position
circular:1178941..1179423
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AA seq
160 aa
AA seq
DB search
MAERSQNLQDLFLNTVRKKKISLTIFLINGVKLTGVITSFDNFCVLLRRDGHSQLVYKHA
ISTIMPGQPLELEIEEGPDRSQNLQDLFLSTVRKKNIALTIFLINGVKLTGVVTAFDNFC
ELLRRDDHAQLVYKHAISTIMPGQPMQMFENEEGAAREAS
NT seq
483 nt
NT seq
+upstream
nt +downstream
nt
atggcggaacgttctcaaaaccttcaagatcttttcctcaacaccgtacgcaagaaaaag
atttcactgacgatcttcctgatcaacggtgtgaagctgacgggcgtgataacgtccttc
gataatttctgcgttcttctgcgccgggacggtcattcgcagctggtttacaagcatgcg
atctcgaccatcatgcccgggcagccgctggaactcgaaatcgaagaaggtccggaccgc
tcgcagaaccttcaggatctgttcctcagcacggttcgcaagaagaacattgcgctgacg
atcttcctgatcaacggtgtcaagctcacgggcgtggtcacggctttcgacaatttctgc
gagctcctgcgtcgcgacgatcacgcacagcttgtctacaagcacgctatttcgaccatc
atgccgggtcagccgatgcagatgttcgaaaacgaagaaggcgctgcacgcgaggcgtcc
tga
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