Agrobacterium pusense CFBP5875: CFBP5875_09230
Help
Entry
CFBP5875_09230 CDS
T06598
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rpus
Agrobacterium pusense CFBP5875
Pathway
rpus02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rpus00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CFBP5875_09230 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpus03021
]
CFBP5875_09230 (rpoD)
Transcription machinery [BR:
rpus03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CFBP5875_09230 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Relaxase_C
DUF5856
Motif
Other DBs
NCBI-ProteinID:
QCL84714
LinkDB
All DBs
Position
circular:complement(1815267..1817321)
Genome browser
AA seq
684 aa
AA seq
DB search
MATKVKENEEAENERDGATDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTS
EQIEDTMAMLSDMGINVIEDEDAEEAAGGDDDGDSDGDDSEGGELAPSSGTALATAKKKE
PTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMISGLCESPLTFQALIIWRD
ELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTRKLRAPTGDED
VTDVGGDGLPPEEEEEDDDESNLSLAAMEAELRPQVMETLDTIADTYKKLRKLQDQQVEA
RLACTGTLSSGQERRYKELKDQLITAVKSLSLNQNRIDSLVEQLYDISKRLMQNEGRLLR
LAESYGVKRDSFLEQYHGAELDPNWMKSIANLAARGWKEFAREESNTIREIRQEIQNLST
ETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN
IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQ
MLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNAL
LPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQ
IEAKALRKLKHPSRSRKLRSFLDS
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaagtcaaagaaaacgaagaagcagaaaacgaacgcgacggtgcgacggac
ggcccgcttctcgacctttcggatgacgcggtcaagaaaatgatcaaggccgccaagaag
cgcggctatgtgacgatggacgagctgaattccgtcctgccgtccgaagaggtgacctcc
gagcagatcgaagacacgatggcgatgctgtccgacatgggcatcaacgtgatcgaggac
gaggatgccgaggaagccgccggtggcgatgacgacggcgattccgacggtgacgattcc
gagggtggcgaacttgcgccttccagcggcaccgcgcttgcgaccgccaagaagaaagaa
ccgaccgaccgcaccgacgaccccgtgcgcatgtatctgcgcgagatgggttctgtcgag
cttctgtcgcgcgaaggcgaaatcgccatcgccaagcgcatcgaggctggccgcgagacg
atgatttcgggcctgtgcgaaagcccgctgacgttccaggcgctgatcatctggcgcgac
gaactcaacgaaggcaccacgctgctgcgcgagatcatcgatctcgaaacgacctattcc
ggcccggaagccaaggctgcgccgcagttccagagcccggaaaagatcgaggccgaccgc
aaggccgccgaagaaaaggaaaagacccgcaagctgcgtgctccgaccggtgacgaggat
gtcaccgatgttggtggtgacggcctgccgccggaagaggaagaagaggacgacgacgag
tccaatctttcccttgctgcgatggaagccgaactgcgtccgcaggtcatggaaacgctc
gacaccattgccgacacctacaagaagctgcgtaagcttcaggatcagcaggtagaggcg
cgtctggcctgcaccggtacgctctcttccggccaggagcgccgttacaaggaattgaag
gatcagctgatcacggccgtgaagtcgctttcgctgaaccagaaccgcatcgacagcctt
gtcgagcagctctacgacatttccaagcgtctgatgcagaacgaaggccggctgctgcgc
cttgcggaatcctatggcgtcaagcgcgacagcttcctcgagcagtatcacggtgcggaa
ctcgatccgaactggatgaagtcgatcgccaatctggccgcccgcggctggaaggaattc
gcgcgcgaagaaagcaacacgatccgggaaatccgccaggagatccagaacctctccacg
gaaaccggcatttccatcgccgaattccgtcgcatcgtttcgatggtgcagaagggtgag
cgcgaagcgcgcatcgccaagaaggagatggtcgaggccaacctgcgtctcgtgatctcg
attgcgaagaagtacacgaatcgtggtctgcagttcctcgatctcattcaggaaggcaat
atcggcctgatgaaggcggtggacaagtttgaataccgtcgcggttacaagttctcgacc
tatgcgacatggtggatcagacaggcgatcacccgctcgattgctgaccaggcccgcacg
atccgtattccggtgcacatgatcgaaacgatcaacaagatcgttcgcacctcgcgccag
atgctgcacgagattggccgcgagccgaccccggaagagctggccgaaaagctggccatg
ccgctggaaaaggtgcgcaaggttctgaagatcgccaaggagccgatctcgctcgaaacc
cccgtgggtgacgaagaggattcgcatctcggtgacttcatcgaggacaagaacgcgctg
ctgccgatcgacgccgccattcaggcgaacctgcgcgaaacgaccacccgcgtattggcc
tcgctgacaccgcgtgaggaacgtgttctgcgcatgcgcttcggcatcggcatgaacact
gaccatacgctggaagaggtcggccaacagttctcggttacgcgcgaacgtattcgccag
atcgaggcgaaggcgctgcgcaagctcaagcacccaagccgctcgagaaagctccgcagc
ttcctcgacagctaa
DBGET
integrated database retrieval system
