Agrobacterium pusense CFBP5875: CFBP5875_10065
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Entry
CFBP5875_10065 CDS
T06598
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rpus
Agrobacterium pusense CFBP5875
Pathway
rpus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFBP5875_10065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpus03019
]
CFBP5875_10065
Enzymes [BR:
rpus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CFBP5875_10065
Messenger RNA biogenesis [BR:
rpus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFBP5875_10065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
Helicase_RecD
CMS1
Flavi_DEAD
AAA_19
AAA_22
Utp25_C
Cas3-like_C_2
Snf7
Motif
Other DBs
NCBI-ProteinID:
QCL84866
LinkDB
All DBs
Position
circular:1991243..1992715
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AA seq
490 aa
AA seq
DB search
MTSFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPI
IEMLMKQADRPANRTCRTLILAPTRELVNQIGENLRAFVKKTPLRINQVVGGASINKQQL
QLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISKMVPAK
RQTLLFSATMPKAIADLAHSYLTDPLKVEVTPPGKAADKVEQYVHFVAGKNDKTELLKKS
LNENPDGRAIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVL
VATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHD
IEKLMKIDIPVASGERPAGLASPTRPNNNRGGRNNNGGQQRGPREGGRHNGESRPSRHHA
PRDADNDLEVTSDFKRVKQAEGDAGRPAGPRKHRRPARKPGGSGANRHAPAGGNGQEKRA
SGNGHRGRNR
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
ttgaccagttttagcgaactcggcctctccgaaaagattgttgccagcgttacccagctt
ggctacacgaccccgacccccattcaggcaaaagccatcccgctgctgctcgaaggccgc
gacctgatcggcctcgcacagaccggaaccggcaagaccgccgctttcggcctgccgatc
atcgaaatgctgatgaagcaggcggaccgcccggcaaaccgcacctgccgcacgctcatc
cttgccccgacccgcgagctggtgaaccagatcggcgaaaacctgcgcgctttcgtgaag
aagacgccgctgcgcatcaaccaggtggttggcggcgcatcgatcaacaagcagcagctc
cagctcgaaaagggcacggacattctggtggcaacccccggccgcctgcttgacctcatc
gcccgcaacgccatctcgctctccaaggtcacctatctggtgctggacgaagcggaccag
atgctcgacctcggcttcatccacgatctgcgcaagatctcgaagatggtgcccgccaag
cgccagacgctgctcttctccgccaccatgccgaaggcgatcgccgatcttgcccacagc
tacctgaccgatccgctgaaggtcgaagtgaccccgcccggcaaggcagccgacaaggtg
gagcaatatgtccacttcgtcgccggcaagaacgacaagaccgagcttctgaagaagtcg
ctcaacgagaacccggatggccgcgccatcgtgttcctgcgcacaaagcacggtgcggag
aagctctacaagcatctcgaacatatcggcttcaaggtcgcctccatccacggcaacaag
agccagggccagcgcgagcgcgccctgaagggcttcaaggacggcgagatcaaggttctg
gtcgcaaccgacgtcgcggcccgcggcatcgatatcccggccgtgacgcacgtcttcaac
tacgacctgccggaagtaccggacgcttatgtccaccgcatcggccgtaccgcccgtgcc
ggccgcgatggcatcgccattgctttctgcgcaccggacgagacccgcctgttgcatgac
atcgaaaagctgatgaagatcgatattccggttgcttctggtgaacgcccggccggtctt
gccagcccgacgcgccccaacaacaaccgcggcggacgcaataacaatggcggccagcag
cgcggtccgcgcgaaggcggacgccacaacggcgaatcccgcccgtctcgccaccacgcg
ccgcgcgatgcggacaatgatcttgaagtcacctcagacttcaagcgcgtgaagcaggcc
gaaggcgacgcaggccgcccggctggcccgcgcaagcatcgtcgtccggcccgcaagccc
ggcggcagcggcgccaaccgccacgcccctgccggcggcaacggccaggaaaaacgcgct
tccggcaacggccatcgcggccgcaaccgttaa
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