Agrobacterium pusense CFBP5875: CFBP5875_20350
Help
Entry
CFBP5875_20350 CDS
T06598
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rpus
Agrobacterium pusense CFBP5875
Pathway
rpus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFBP5875_20350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpus03019
]
CFBP5875_20350
03009 Ribosome biogenesis [BR:
rpus03009
]
CFBP5875_20350
Enzymes [BR:
rpus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CFBP5875_20350
Messenger RNA biogenesis [BR:
rpus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFBP5875_20350
Ribosome biogenesis [BR:
rpus03009
]
Prokaryotic type
rRNA helicases
CFBP5875_20350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
SBF_like
Motif
Other DBs
NCBI-ProteinID:
QCL86939
LinkDB
All DBs
Position
linear:complement(1347784..1349631)
Genome browser
AA seq
615 aa
AA seq
DB search
MTDTQGIAPAIAQALEKRGYKDLTPVQQAMLAPELADKDALVSAQTGSGKTVAFGIALAT
TLLRDNTRFGQAAAPLALAIAPTRELAMQVKRELEWLYEFAGVSIASCVGGMDIRNERRA
LERGAHIVVGTPGRLCDHIKRNALDLSSIRAVVLDEADEMLDLGFREDLEFILEKSPEDR
RTLMFSATVPRSIAKLAESYQKNAVRIATASEQKQHVDIEYRALLVSPSDRENAIINALR
FYEARNAIVFCSTRAAVNHLTARLNNRGFSVVALSGELTQNERTHALQAMRDGRARVCVA
TDVAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGQKGVSAIVVPVSQRRKAERLL
EGAKVSAAWVHPPSVEEIVERDGARLLADPTLSEAVADDERDFVTKLLEQHGAEKVAAAF
VRLYHAGRSAPEDIFEVALDNTRKPRRDSFETVENNAPRRDRSDFSDSAWFSLSVGRKQS
AEPRWLIPMLCRFGKITRQDIGAIRMQQTETFVELAADAVDRFTSAIGKDMTLEKGIRLK
ALEGKPEMTGGFREDTRPAKAQRKFSKSDNASAPRDDRKGEDKPWKKKKPFGDKPKYEGK
KDKPFEKRGPKPTKG
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgacagacacccagggtatcgccccggcgatcgcgcaggcgttggaaaaacgcggctac
aaagatttgacccccgtgcagcaggccatgcttgcgccggaacttgccgacaaggacgcg
ctggtttccgcgcagaccggttccggcaagaccgttgccttcggcatcgcgcttgcgacc
acgctgctgcgtgacaacacccgtttcggccaggccgctgcccctctggcgcttgccatc
gcccccacacgcgaactggccatgcaggtcaagcgcgagctggaatggctttacgaattt
gccggtgtctccatcgcctcctgcgtcggcggcatggatatccgcaatgagcgccgggcg
ctggagcgcggtgctcatatcgtcgtcggcacgcccggccgtctctgcgaccacatcaag
cgcaatgcactcgatctctcatcgatccgcgctgtcgtgctcgacgaagccgacgaaatg
ctcgacctcggcttccgtgaagatctggaattcattctggagaaatcgcccgaagatcgc
cgcacgctgatgttctcggccaccgtgccgcgcagcatcgccaagctggccgaaagctac
cagaagaacgccgtgcgcatcgccaccgcttccgaacagaagcagcatgtggatatcgaa
tatcgcgcgcttctggtttcgccttccgatcgcgagaacgccatcatcaatgcgctgcgc
ttttacgaagcccgcaacgccatcgtgttctgctccacccgcgccgcggtgaaccacctg
acggcccgcctgaacaatcgtggcttctccgtcgtggctctctccggcgaactgacgcag
aacgagcgcacacatgccctgcaggccatgcgtgacggccgcgcccgcgtttgcgtggcg
acagacgttgccgcccgcggcattgacctgcccggcctcgaactcgtcatccatgccgac
ctgccgaccaattccgaaacacttctgcaccgttccggccgcaccggccgcgccggtcag
aagggcgtcagcgccatcgtggtgccggtcagccagcgccgcaaggccgagcgcctgctc
gaaggcgccaaggtcagtgccgcatgggtacacccaccctccgttgaagagatcgtcgag
cgcgacggcgcccggcttctggccgatcctacgctgagcgaagcagtggcggatgacgaa
cgcgatttcgtgaccaagctgctggaacagcatggcgcggaaaaagtcgcggcggccttc
gtgcgcctttatcatgcaggacgttcggcaccggaagacatttttgaagtcgcgcttgat
aacacccgcaagccgcgccgcgacagtttcgaaacggtcgaaaacaacgctccgcgccgc
gacaggtccgatttctccgacagtgcctggttctccctgtctgtcggtcgcaagcagagt
gcggaaccgcgctggcttatcccgatgctctgccgtttcggcaagatcacccgccaggat
atcggcgcgatccgcatgcaacagaccgaaaccttcgtggaactggcagccgacgccgtc
gaccgcttcacctccgccatcggcaaggacatgacgctggaaaagggcattcgcctgaag
gcgcttgagggcaaacccgagatgaccggcggcttccgcgaagacacgcggccggccaag
gcccagcggaagttcagcaagtccgacaacgcgagcgccccccgcgatgatcgcaagggc
gaagacaagccctggaaaaagaaaaagccctttggcgacaagccgaaatatgagggcaag
aaggacaagccattcgaaaagcgtgggccaaagccgacaaagggttga
DBGET
integrated database retrieval system
