Rickettsia prowazekii Chernikova: M9W_02145
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Entry
M9W_02145 CDS
T01789
Name
(GenBank) hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rpw
Rickettsia prowazekii Chernikova
Pathway
rpw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M9W_02145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpw03019
]
M9W_02145
Messenger RNA biogenesis [BR:
rpw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M9W_02145
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RMMBL
RNase_J_C
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AFE49254
LinkDB
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Position
536324..538006
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AA seq
560 aa
AA seq
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MSSFNIKNHKNDLLFVPLGGSNEIGMNLNLYHYKGKWLMIDCGSGFADDYLPGVDMIIAD
SSFIEKYKKDLVGLILTHAHEDHLGGVQYLWNSLKCPIYTTTFTANFLKIRLNEYDFAKN
IKIHEVKPGSKINLEPFSLEMVPLTHSAPEMQAIMIRTDSGNILHTGDWKFDNDPILGKK
VDEELLKSYGDEGVLALVCDSTNVFNKGSSGSEGDVRKSLIDIIAGCPQMVVVSTFASNL
ARLDTIMHAARLAGRKVVLTGRSLYRMIFAAQESGYFKDLAPLISERDVSRFRRKELLVI
ATGCQGESMAATAKLASNSHPSIKLAPQDTMIFSAKIIPGNEKKIFRLFNVFVKAGVEVM
TERDHFVHVSGHPSIDELQKMYSLIRPNICIPVHGEPVHIHEHVKLAKKNGIEHAIEVEN
GSVVLLEPNNAKVISKVENGYLAVDGNYLLPVESPIFKIRRRMRESGIVVASVVINKKGL
LSANPILSMPGLLDPKEDIALVNLIKNDIKELITIQKQRAKKVLSDEQVIESIKSTIRKT
LKQEINKSPFIIVNLEKTLE
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcattcaacatcaaaaatcataaaaatgatctgctatttgtaccgctaggagga
tctaatgaaataggtatgaatcttaatctttaccattataaaggtaaatggttaatgatt
gattgtggtagtggttttgccgatgattatctaccaggtgttgatatgataattgctgat
agtagttttatagaaaaatataaaaaagatttagtaggactgattttaactcatgcgcat
gaggatcatttaggaggtgtccaatatttatggaatagccttaaatgtcctatttatact
actacttttacagcaaattttttgaagattcgtttaaatgaatatgattttgctaaaaat
ataaaaattcatgaagtaaaaccaggtagtaaaataaatctagagccattttcattagag
atggtaccactaacacattccgctcctgaaatgcaggcaattatgatccgtactgattct
ggtaatattttacatactggagattggaaatttgataatgatccgatacttggaaaaaaa
gtcgatgaggaacttttaaaatcctatggtgatgaaggtgttttagcacttgtttgtgat
tcaactaatgtgtttaataaaggaagctcagggtctgaaggtgatgttagaaaaagttta
atagatattatagcaggttgtcctcaaatggtagtagtttcaacatttgcttctaattta
gcgcgtcttgatacaataatgcatgcagcaaggcttgctggtagaaaagtagtattaaca
ggtagaagtttataccgtatgatctttgcagcgcaagaaagcggatattttaaagattta
gctcctctaattagtgaacgtgatgttagcagatttagaagaaaagaattattagtaatc
gctactggttgtcaaggtgagtctatggctgccaccgcaaaactcgctagtaattctcat
ccgtctataaagcttgcgcctcaggacacaatgattttttctgcaaaaattattcctggt
aatgaaaagaaaatattcaggctatttaatgtatttgttaaagctggtgtagaagtaatg
accgaacgagatcattttgtacatgtttcaggacatccatcaattgatgagctacaaaaa
atgtactctctaattagaccaaatatttgtatacccgttcacggcgagcctgtacatatt
catgaacatgttaaacttgctaagaaaaacggtatagaacatgcaatagaggttgaaaat
ggtagtgtagtgttgcttgaacctaataatgcaaaagtaatttcaaaggttgaaaatggt
tatttagctgtagatggtaattatttactaccagttgaatctccaattttcaaaattaga
aggcgtatgcgtgaatcaggtatcgtggtagcatcggtagtaattaacaaaaaagggcta
ctttctgcgaatccaattctgtctatgcctgggctgcttgatcccaaagaggatattgca
ttagttaatcttataaaaaacgacattaaggaactgattactattcaaaagcaacgtgct
aaaaaagtattatcagatgaacaagtaatcgaatcaataaaaagcacaattcgtaaaaca
ttaaaacaagaaattaataaatcgcctttcataatagttaatcttgagaaaactctggaa
tag
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