Rickettsia prowazekii Chernikova: M9W_03770
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Entry
M9W_03770 CDS
T01789
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rpw
Rickettsia prowazekii Chernikova
Pathway
rpw03030
DNA replication
rpw03430
Mismatch repair
rpw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rpw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M9W_03770 (dnaE)
03430 Mismatch repair
M9W_03770 (dnaE)
03440 Homologous recombination
M9W_03770 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpw03032
]
M9W_03770 (dnaE)
03400 DNA repair and recombination proteins [BR:
rpw03400
]
M9W_03770 (dnaE)
Enzymes [BR:
rpw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
M9W_03770 (dnaE)
DNA replication proteins [BR:
rpw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
M9W_03770 (dnaE)
DNA repair and recombination proteins [BR:
rpw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
M9W_03770 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF5487
Motif
Other DBs
NCBI-ProteinID:
AFE49574
LinkDB
All DBs
Position
complement(969836..973384)
Genome browser
AA seq
1182 aa
AA seq
DB search
MQPEFIHLRTQSSYSFLESALTIEKVVELALLHKMPALCLSDRGNLFGSLEFSLYAVKKK
LQPIHGVILNIQYDINAFAQILLIAKDETGYKNLLKLSSLTFTKNDRKICEHIGFEDLIK
YQEGVIALCCYTDGIVGKCLLARKQEQAILFARRLQAILGDRFYFEIMRHDLPEEQFIEN
SYIQIASELSIPIVATNKVLFSEKSMHYAHDVLLCISEGVTKEYPDRKTVSENCYFKSPA
EMRKLFSDLPNAIQNTINLRERCYFAAHPNPPMLPNFSTQDISETYLIRKYATEGLLARL
VTKFKAENISLEHQEKLKTEYFTRLNYELDIICNMNFAGYFLIVSDFIKWSKKQGILVGP
GRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDIDFCQERREEVINYVRS
KYGPNRVGQIITFGKMQAKAVIKDVARVLSLPYKLADYLTELVPFSAINPVSLEQAIREV
PELANAAKGNGLYNLEGDAELIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDLVDIVPVY
KDANADMLIVGYSMKYSEIAGLIKFDFLGLQTLTVITNCKKLLKEQGIKIDFDDMTFDDK
KTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALYRPGPMENIPTYIACKH
KLQQPDYLHKLLEPILEETYGVVIYQEQVQRIAQVLAGYTLGAADLLRRAMGKKIKKEME
EQEEIFVKGAIANNISPSQAKSIFSTVAKFAGYGFNKAHAAAYGVISYQTAYLKANYPAE
FLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSVKSSNTVITHSTKSVIS
RLNCDIKKIAKDTAVKPLYCKDESTIIFALGAIKGVTANFGKLVTDERKARGAFKSITDF
IERLPPKSINSKLLENLIKAGCFDELHDNRLQLFLSIPKLIAYSTSYHQEQESNQFSLIK
VSSLSPTILVSSDYADKNTLAFYEFEAMGLFLSNHPLTEYQGIFSRLNILNTRDLYNKLP
NGTNRVTLAGVIQKKDSRMSARGRFVTLVLSDPENIFELTIFSEEVLKDYVHLLDVKSLV
VVNCDVVKDEGGIKLTAKSFLSIEDVMNNRQFELQLYPQNYAELEQIITLLASRTSNGYQ
SNAKATIYLQSKDVKHFIAKITLSETFFLQVQDFEVLNQYIR
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgcaacctgaatttatacatttaagaacgcaaagctcttattctttcttagaaagtgcc
ttaacgatcgaaaaagttgtagaacttgctttattacataaaatgcctgctctttgtttg
tcagatagaggtaacttatttggctcactagagttttcattatacgcagtaaaaaaaaaa
ctgcagccaatccacggggttattcttaatatacaatatgatataaacgcttttgcacaa
attttgttgatagctaaagatgaaaccggttataaaaatttactcaaactgtcaagcctg
acttttactaagaatgatcgtaagatatgtgagcacattggttttgaagatttaatcaaa
tatcaagagggagtaatagcgttatgttgttatactgatggtattgtcggaaaatgcttg
ctagctcgtaagcaggaacaagcgattctgtttgctcgtagattacaggcaattttagga
gaccgtttttactttgagattatgagacatgatttaccagaagaacagtttattgagaat
agttatattcagatagcttctgaattatctattccaattgttgctactaataaagtgttg
tttagtgaaaaaagcatgcattatgcacatgatgtattgttatgtatatcagaaggtgtt
actaaggaatatcctgatcgtaaaacagttagtgagaattgttattttaaatctcctgct
gaaatgagaaaattgttttctgatctacctaatgcaattcaaaataccatcaatttaaga
gaacgttgttattttgcggcacacccaaatccaccaatgctgcctaatttttcaactcaa
gatattagtgaaacatatttaattagaaaatatgcaacagaggggttgcttgcacggctg
gttacaaagtttaaagctgaaaatatttctctagaacatcaagaaaaattaaaaactgaa
tattttactcgtcttaattatgagctggatattatttgtaatatgaattttgccggttat
tttttgattgtatcagattttattaaatggagcaaaaaacagggtattttagtaggacct
ggtagaggttctggagctggatcagttgttgcgtggagcttacttattactgacctcgat
ccgattaaattcggtttgttatttgaaagatttttaaatcctgaacgtatttcaatgcct
gattttgatattgatttttgtcaagaaaggagagaggaagtaattaattatgtacgttct
aaatacggtcctaatagagtaggacaaattataacttttggtaagatgcaggcaaaagct
gtaattaaggatgttgctcgtgtacttagcttaccttataaattggctgattatctcact
gagcttgtgccttttagtgctattaatccagtgagtctagaacaggcaatacgtgaagtc
ccagagcttgcaaatgctgctaaaggtaatggactatataatttagagggtgatgcagag
ttaattaagttagtgcttgatacttcgttaattcttgagggactacatagacattcctca
acccatgctgcaggaatcgtaatagcagggactgatttagttgatatagtacctgtatat
aaagatgctaacgccgatatgttgattgtcggttattctatgaaatattccgagattgct
ggtttaatcaaatttgattttttaggactccaaactttaacagttattactaattgtaaa
aaattacttaaagagcaaggtataaaaatagattttgacgatatgacatttgatgataaa
aagacttaccaaatgttatgtaaaggtaaaggagtcggggttttccaatttgaaagtatt
ggtatgaaagatgcacttagacgtcttaaacctgattctatacatgatttgatagccctt
ggtgcgttataccgtcccggtcccatggaaaatatccctacatatatagcttgtaaacat
aaattacagcaacctgattatttacataaattattagagccgatattggaagaaacatat
ggagtggtaatatatcaagaacaagtacaaagaatagcacaggtgctagcagggtataca
ctcggtgcagctgatttgcttcgtagggccatgggtaagaagatcaaaaaagaaatggag
gagcaggaagagatttttgtaaaaggagcaattgctaataatatttcaccgtctcaagcg
aaatctattttttctaccgtagctaaatttgctggatatggttttaataaagctcatgct
gcagcttatggtgttatttcataccaaactgcttatcttaaagctaattatcctgctgaa
ttcttagtagcatgtttaaatcttgaattaaataatcatgataaaattaatttatttctg
caagaagcaaaagataatggtatcaaaattattgcacctaatattaatatttctgagggg
tattttagtgtaaagtcttcaaacactgtgattacgcatagcacaaaatctgtaatatct
agacttaactgtgatattaagaaaattgcaaaagatactgcggttaagccgttgtattgc
aaagacgaaagtacaataattttcgctttaggggctattaagggtgtgacagcgaatttc
ggtaagttagtaacggatgaacgaaaagcaagaggagcatttaaatcaattactgatttt
attgaaagattaccaccaaaatctattaacagtaaattgttggaaaatttaatcaaggca
ggttgttttgatgagttgcatgataatagattgcaattatttttaagtattccaaaattg
attgcttattcaacgtcatatcatcaagagcaggaatctaatcaatttagcttaattaaa
gtttctagtttaagtccaactattttagtatcaagcgattatgcagataaaaatacttta
gctttttatgaatttgaggctatgggtttatttctctctaatcatcctcttactgaatat
cagggaatatttagtcgtttaaatatcctaaatactcgggatttatataataaattacct
aatggtactaaccgagtaacgcttgctggtgtaatacaaaaaaaggattctcgcatgtct
gcaagaggtagattcgtaactcttgttctttctgatcctgaaaatatctttgaacttact
atttttagtgaggaagttttaaaagattatgtacatttacttgatgttaaaagcttagta
gtcgttaattgtgatgtagttaaagatgaaggtggaataaaactcacggccaaaagcttt
ttatcaattgaagatgtaatgaataatagacaatttgaactacaactttacccacaaaat
tatgcagaattagagcagataataacattgcttgcatcgcgcactagtaatggatatcaa
agtaatgctaaagctacaatctatttacaaagcaaagatgtaaagcattttatcgcaaaa
attacattatctgaaacgttttttcttcaagtgcaagattttgaggtattaaatcaatat
attcgatga
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