Rhodopseudomonas palustris DX-1: Rpdx1_0004
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Entry
Rpdx1_0004 CDS
T01381
Name
(GenBank) DNA gyrase, B subunit
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
rpx
Rhodopseudomonas palustris DX-1
Brite
KEGG Orthology (KO) [BR:
rpx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpx03032
]
Rpdx1_0004
03400 DNA repair and recombination proteins [BR:
rpx03400
]
Rpdx1_0004
Enzymes [BR:
rpx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
Rpdx1_0004
DNA replication proteins [BR:
rpx03032
]
Prokaryotic type
DNA Topoisomerases
Rpdx1_0004
DNA repair and recombination proteins [BR:
rpx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Rpdx1_0004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
GyrB_insert
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
ADU41649
UniProt:
E6VE36
LinkDB
All DBs
Position
4482..6923
Genome browser
AA seq
813 aa
AA seq
DB search
MTEPARQPSAESVHPAPAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVD
NAIDEALAGHASAVEVILNADGSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGKFD
QNSYKVSGGLHGVGVSVVNALSSKLILRVWRDGKEHYIEFAHGDAVAPLSVVGDAGGRRG
TEVTFYASSETFTNVEYDFATLEHRLRELAFLNSGVNILLSDLRHAVEKREEMRYEGGVT
EFVKYLDRNKKPIVPTPIVVAADLNGIAVEAALWWNDTYHENVLCFTNNIPQRDGGTHLA
GFRAALTRQLTGYADNNAKKEKVALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV
RPVVENVLNEALAAWFEEHPSEAKTIVGKVIEAAAAREAARKARELTRRKGALDIASLPG
KLADCQERDPSKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSSE
QIGTLITALGTGIGRDDFDIGKLRYHKIILMTDADVDGAHIRTLLLTFFFRQMPALIEGG
YLYIAQPPLYKVTRGKSEQYLKDERALEDYLIATGLDDCVFKLATGEERGRRDLLKLVED
ARAIRSTLNNLHSRYNRSVVEQAAIAGVLSPRVTADIATANEAAAYIARRLDALADEVER
GWIGRFTEGEGFAFERTVRGVKEVAAIDDALLGSADARKLDEYAAVLQEVYPRPGVLRRK
DAETAIHGPISLFEAVTDAGRKGVALQRYKGLGEMNPGQLWETTLDTNARSLLQVKVREV
DEADDIFTKLMGDVVEPRREFIQENSLHATVDV
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgactgaacctgcccggcagccctctgccgaatccgtgcatcctgcgccggccgaatat
ggcgcggaatcgatccgggtgctgaagggtctcgatgccgtccgcaaacggccgggcatg
tatatcggcgacaccgacgacggcagcggcctgcaccacatggtgtacgaagtcgtcgat
aacgccatcgacgaagcgctggcggggcacgccagcgcggtcgaagtgatcctcaacgcc
gacggctcggtgacggtgcgcgacgacggccgcggcatcccggtcgacatccacaagggc
gaaggcatctcggcggccgaggtcatcatgacccagctccacgccggcggaaaattcgac
cagaactcctacaaggtgtcgggtggtctgcacggcgtcggcgtctcggtggtcaacgcg
ctgtcgagcaagctgatcctgcgcgtctggcgggacggcaaggagcactacatcgaattc
gcccatggcgacgcagtggcgccgctcagcgtggtgggcgacgcgggcggacggcgcggc
accgaggtgacattctacgcctcgtccgagaccttcaccaacgtcgaatacgacttcgcc
acgctggagcaccggctgcgcgaactggccttcctcaattccggcgtcaacattctgctg
tccgacctgcgccacgcagtcgagaagcgcgaagagatgcgctacgagggcggcgtcacc
gagttcgtcaaatatctcgaccgcaacaagaagcctatcgtgccgacgccgatcgtcgtc
gcggccgacctcaatggcatcgcggtcgaagccgcactgtggtggaacgacacgtatcat
gagaacgtgctgtgcttcaccaacaacatcccgcagcgcgacggcggcacgcatctggcc
ggcttccgcgccgcgctgacgcggcagctcaccggctacgccgacaacaacgccaagaag
gaaaaggtggcgctgaccggcgacgattgccgcgagggactgaccgcggtgctgtcggtg
aaagtgccggacccgaaattctcgtcgcagaccaaggacaagctggtgtcctcggaagtg
cgtccggtggtcgagaacgtgctcaacgaagcgctcgccgcgtggttcgaggagcatccg
agcgaggccaagaccatcgtcggcaaggtgatcgaagccgcagcggcccgcgaagccgcg
cgaaaagcgcgcgagctgacgcggcgcaagggcgcgctcgacatcgcctcgctgcccggc
aagctcgccgactgtcaggagcgcgatccgtcgaaatcggaactgttcatcgtcgagggc
gactcggccggcggctccgccaagcagggtcgcaaccgcgaattccaggccgtgctgccg
ctacgcggcaagatcctcaacgtcgaacgcgcgcgcttcgacaagatgctgagctcggag
cagatcggcacactgatcaccgcgctcggcaccggcatcggccgcgacgatttcgacatc
ggcaagctgcgctatcacaagatcatcctgatgaccgacgccgacgtcgacggcgcgcat
attcgcaccctgctgctgacgttcttcttccggcagatgccggcgctgatcgagggcggc
tatctctacatcgcgcagccgccgctctacaaagtcacccgcggcaagtccgagcagtat
ctgaaggacgagcgcgcgctcgaggactatctgatcgccaccgggttggacgactgcgtg
ttcaagctggccaccggcgaggagcgcggtcgccgcgacctgctgaagctggtcgaggac
gcgcgcgcgatccgcagcacactcaacaatctgcacagccgctacaatcgtagcgtggtc
gagcaggccgcgatcgccggcgtgctcagcccgcgcgtcaccgccgacatcgccaccgcc
aacgaggcggccgcctatatcgcgcgccggctcgacgcgttggctgacgaagtcgaacgc
ggttggatcggccgcttcaccgaaggcgagggcttcgcgttcgaacgcaccgtgcgcggc
gtcaaggaagtcgcggcgatcgacgacgcgctgctcggctccgccgacgcccggaagctc
gacgaatatgcggcggtgctgcaggaagtctatccgcgccccggcgtacttcgtcgcaag
gatgccgaaaccgcaatccacggcccgatcagcctgttcgaggcggtgaccgacgccggc
cgcaagggcgtggcgctgcaacgctacaaaggcctcggcgagatgaatcccggtcagctc
tgggagaccacgctcgacaccaacgcccgctcgctgctgcaggtcaaagtgcgcgaagtc
gacgaggccgacgacattttcaccaagctgatgggcgacgtcgtcgaaccgcgccgtgaa
ttcattcaggagaattcgttgcacgcgacagtagacgtgtag
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