Rhodopseudomonas palustris DX-1: Rpdx1_0052
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Entry
Rpdx1_0052 CDS
T01381
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
rpx
Rhodopseudomonas palustris DX-1
Pathway
rpx02020
Two-component system
rpx02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rpx00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Rpdx1_0052
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Rpdx1_0052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpx03021
]
Rpdx1_0052
Transcription machinery [BR:
rpx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Rpdx1_0052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
ETF
Arg_repressor
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
ADU41696
UniProt:
E6VF26
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All DBs
Position
56339..57982
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AA seq
547 aa
AA seq
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MALSQRLEFRQTQSLVMTPQLMQAIKLLQLSNLDLAAFVEDELEKNPLLDRASDNGEPPV
AGETAVDGSESGNDFSQSGGDDAGGESSDFVEAGSASAFEPGTEEWMHRDLGSRSDIEQT
LDTGMENVFPEEPAEAAARAAQDSAPASYTEWGGGASSDEGYNLEAFVAAETSLADHLAE
QLAVAVTTPSQRLIGQYLIDLVDDAGYLPPDLGDAAERLGASSAEVEAVVHVLQTFDPPG
ICARNLSECLAIQLRERDRYDPAMQALVEHLDLLAKRDVASLRKICGVDDEDLVDMIGEI
RHLDPKPGLKFGSSRVQTIVPDVFVRPGPDGGWLVELNSDTLPKVLVNQSYYSELSKTIR
KDGDKSYFSDCLQNATWLVRALDQRARTILKVATEIVRQQDGFFTHGVKHLRPLNLKAVA
DAIQMHESTVSRVTANKYMATNRGTFELKYFFTASIASADGGEAHSAEAVRHQIRQLIDS
EDPSAILSDDTIVDRLREAGIDIARRTVAKYREAMRIPSSVQRRRDKQNMLGTQSAAASR
SRDTAPA
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtcgcaacgactcgaattccgccagacacagtctctggtgatgaccccgcaa
ctgatgcaggcgatcaagctgcttcagttgtcgaatctcgacctcgcggcattcgtcgaa
gacgaactcgaaaagaacccgcttctcgatcgcgccagcgacaatggcgagccaccggtg
gccggtgagaccgcggtggacggcagcgagagcggtaacgatttcagccagagcggcggt
gacgacgccggtggtgaaagctccgacttcgtcgaggcgggaagcgcaagcgccttcgag
cccggcaccgaagagtggatgcaccgggatctcggcagccgcagcgatatcgagcagacg
ctcgataccggcatggaaaacgtattccccgaagagcccgccgaagccgcagcccgtgcc
gcacaggacagcgcgccggcctcctatacggaatggggcggcggggcctcatcggacgag
ggctacaatctcgaagccttcgtggccgccgagacttcgctcgccgatcatctcgccgaa
cagctcgccgtcgcggtgacgacaccgtcgcagcgcctgatcgggcaatacctgatcgat
ctggtcgacgacgccggctacttgccgcccgatctgggcgacgccgccgaacggctcggc
gccagttcggccgaagtcgaagctgtcgtgcacgtgctgcagaccttcgatccgcccggc
atctgcgcgcgcaacctgagcgaatgcctcgccatccagctccgcgagcgcgaccgctac
gatccggcgatgcaggcgctggtcgaacatctcgatctactggccaagcgcgacgtcgcc
agcttgcgcaagatctgcggcgtcgacgacgaggatctcgtcgacatgatcggcgaaatc
cgccacctcgatccgaagcccggactgaaattcggctcgtcgcgggtgcagaccatcgtg
cccgacgtattcgtccgccccggccccgacggcggctggctggtcgaactcaacagcgac
acgttgccgaaggtactcgtcaaccagtcgtactattcggagctgtcgaagacgatccgc
aaggacggcgacaagtcgtacttctccgactgtctgcagaacgccacctggctggtgcgc
gcgcttgatcagcgcgcccgcaccattctcaaggtcgccaccgagatcgtgcgccagcag
gacggcttcttcacccacggcgtcaaacatctgcggccgctgaatctgaaagccgtggcc
gacgcgatccagatgcacgaatcgacggtgtcgcgcgtcaccgccaacaaatacatggcg
accaaccgcggcactttcgaacttaagtatttcttcaccgcgtcgatcgcttccgccgac
ggcggcgaagcacactcggccgaagccgtgcggcaccagatccgccagttgatcgacagc
gaggatccgtcggcgatcctgtcggatgatacgatcgtcgaccggctgcgcgaagccggc
atcgacatcgcgcgtcgcaccgtcgcgaagtatcgcgaagcgatgcgtatcccctcttca
gtgcagcgccgccgggacaaacagaacatgctcggtacgcagtcggcggccgcgagccgg
tcccgcgacaccgccccagcttga
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