Rhodopseudomonas palustris DX-1: Rpdx1_0077
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Entry
Rpdx1_0077 CDS
T01381
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
rpx
Rhodopseudomonas palustris DX-1
Brite
KEGG Orthology (KO) [BR:
rpx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpx03400
]
Rpdx1_0077
Enzymes [BR:
rpx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rpdx1_0077
DNA repair and recombination proteins [BR:
rpx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
Rpdx1_0077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
ADU41721
UniProt:
E6VF51
LinkDB
All DBs
Position
complement(83304..86453)
Genome browser
AA seq
1049 aa
AA seq
DB search
MHVFSVPSSAPFLRTVIAALVDGRLVDGFEARSAPERLADATLYLPTRRAGRMAREIFLD
VLGADAVLLPRIVALGDIDEDELAFAQAASGLADLEIPPALDGLPRRLLLAQLIASWAAR
LKPDDPTQAPLVVGGPASALALADDLARLIDDMSTRGVDWSALETLVPDAFDRYWSLTLD
FLKIAGHAWPEYLKETDRIEPAARRDRLIDAEAQRLATQRSGPVIAAGSTGSMPATAKLL
TAIARLPHGAVVLPGLDVDLDDAAWDLIGGSRDRQGKLVTPPSPNHPQYAMHGLLDRMGV
TRRDVQQLGTPARHGRELLASEALRPSSATAVWHDRLKDADVDRLIGEGIGGLTLIEAPN
SEAEALAIAVVLREAREQGKTAALVTPDRALARRVVAALGRWHLPVDDSGGDSLMETQPG
IFARLAAEAALEGCEPATLLALLKHPLLRLGRADHGWRRAIETLELALLRGPRPPAGCHG
LAKEFAIFRIELAKLKRGEASALHPSEPRTRLSEPSLDDAQALIAQLEAALAPLETFGPS
PLDLCEIGARHRDVLKALTTDHEGIAEAFEGPQGSALLRAFDDLAAVGPASGVLVAARDY
GEVFETAFGDRVVRRPELAEAPIRIYGPLEARLTQQDRVVLGGLVEGVWPPAPRIDPWLS
RPMRHELGLDLPERRIGLSAHDFAQALGADEVFIAHAAKVGGAPAVASRFLHRLEAVAGE
DRWKAMKARGQIYLDYTHELDRPESVTPIAQPAPRPPRIARPLKLPVTAIEDWLRDPYTI
YAKYILRLSPLDPVDMPLSGADRGSAIHAALGEFTERYQDAMPDDPAAALRQIGQKHFAP
LMDHAEARALWWPRFLRIATWFGAWEQQRRTGVVQVQAERRGTLMIPLGGERNFELSARA
DRIERRDDGSYAILDYKTGHPPTGKQVRMGLSPQLTLEAAILRDGGFEGIPAAASVSELT
YVKLSGNTPPGDERVLELKIERKDEPQHPDDAADEARAKLEGLVRRFEDEKQSYRSLVLS
MWSQRYGTYDDLARIKEWSAAGGRGDALS
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgcacgtcttcagcgttccatcttcggcgccgtttctgcgcacggtcatcgcggccctg
gtcgacggccggctggtcgacggcttcgaggcgcgcagcgcgccggagcggctcgccgac
gccaccctctacttgcccacccggcgcgccggccggatggcgcgcgagatcttcttggac
gtgctcggtgccgatgcggtgctgctgccgcggatcgtcgcgcttggcgatatcgacgaa
gacgagctggcgttcgcgcaggccgcatcgggactcgccgatctggagattccgccggcg
cttgacgggctgccgcgccggctgttgctggcgcaactgatcgcaagctgggcggcacgg
ttgaagccggacgatccgacgcaggcgccgctggtggtcggcggtccggcctcggcgctg
gcgctcgccgacgatctggcgcggctgatcgacgacatgtcgacccgcggcgtcgattgg
tcggcactcgagacattggtgcctgacgcgttcgatcgctactggagtctgacgctcgat
ttcctcaagatcgccggccacgcttggccggaatatctgaaagagactgaccggatcgaa
cccgccgcacgccgcgaccggctgatcgatgccgaggcgcagcggttggcgacccagcgc
agcggcccggtgatcgccgccggctcgaccggctcgatgccggcgaccgcgaagctgctc
accgcgatcgcgcgattgccgcatggcgcggtggtgctgcccggcctcgatgtcgatctc
gacgacgcggcgtgggatctgatcggcggcagccgcgaccggcagggcaagctcgtgacg
ccgccatcgccgaaccatccgcaatacgccatgcacggcctgctcgaccggatgggcgtg
acacgtcgggatgtgcagcagctcggcacgcccgcccggcacggccgcgaactcctcgcc
tccgaggcgctgcggccgtcatcggcaaccgccgtatggcacgaccggctgaaggatgcc
gacgtcgatcgcctgatcggcgaaggtatcggcgggctgacgctgatcgaagcgccgaat
tcggaagccgaggcgctggcgatcgcggtggtgctgcgcgaggcgcgggagcagggcaag
accgcagcgctggtcacgccggatcgcgccctggcgcgccgcgtggtcgctgcactcggc
cgctggcatcttccggtcgacgattccggcggcgactcgctgatggagacgcagcccggc
atttttgcgcggcttgcggccgaggctgcacttgaaggctgcgagccggcgacattgctg
gctctgctcaagcatccgctgctccggctcggccgcgctgatcatggctggcgccgcgcg
atcgaaaccctggagctggcgctgctgcgcggtccgcggccgcctgccggctgccacggg
ctcgccaaggagttcgcaatctttcggattgaactcgccaagctgaagcgcggcgaggcc
agcgcgctgcatccgtccgagccgcgcacacgattgtcggagccgagcctcgacgatgcg
caggcgctgatcgcgcagctcgaggccgcgctcgcgccgctggagacgttcggaccgagc
ccgctcgatctgtgcgagatcggagcgcggcatcgcgacgtcttgaaggcgctgacgacc
gatcacgaaggcatcgccgaagccttcgaaggcccgcaaggttcggcactgctgcgagcg
ttcgacgatctcgccgcggtcgggccggcgagcggcgtgctggtcgctgcgcgtgactat
ggcgaagtgttcgagaccgcgttcggcgatcgcgtcgtccgccgtcccgaactcgccgag
gcgccgatccggatctatggcccgctcgaagcccgtctgacgcagcaggaccgggtcgtg
ctcggcggcttggtcgagggcgtctggccgccggcgccgcggatcgacccgtggctgagc
cggccgatgcggcacgaactcgggctcgatctgccggagcgccgcatcggcctgtcggcg
cacgacttcgcgcaggcgctcggcgccgacgaagtgttcattgcccacgccgccaaggtc
ggcggtgcgcccgcggtggcgtcgcgcttcctgcaccggctcgaagcggtcgccggcgag
gatcgctggaaggcgatgaaggcgcgcgggcagatctatctggattacacgcacgaactc
gatcgccccgagagcgtgacgccgatcgcgcagcctgcaccgaggccgccgcggatcgcg
cggccgctgaaactgccggtcaccgcgatcgaggattggctgcgcgatccgtacacgatc
tacgccaagtacatcctgcggctgtcgccgctcgatccggtcgacatgccgctgtcgggt
gccgatcgcggctcggcgatccatgcggcgctgggcgaattcaccgaacgctatcaggat
gcgatgccggacgatccggcggcggcgctgcgccagatcggccaaaaacattttgcgccg
ctgatggaccatgccgaggcgcgcgcgctgtggtggccgcgcttcctgcggatcgcgaca
tggttcggcgcgtgggagcagcagcgccgcaccggcgtcgtgcaggtgcaggcggagcgc
cgcggcacgctgatgatcccgcttggtggcgagcgcaatttcgaactatcggcgcgcgcc
gaccgcatcgaacgtcgcgacgacggcagctacgcgatcctcgactacaagaccggccat
ccgccgaccggcaagcaggtgaggatggggctgtcgccgcagctcacactggaagcggcg
attctgcgcgacggtggctttgagggtattccggctgccgcctcggtgagcgagctcact
tacgtcaagctcagcggtaatacgccgcccggcgatgagcgcgtgctcgaactgaagatc
gagcgcaaggacgagccgcagcaccccgacgatgccgccgatgaagcgcgcgctaagctc
gaaggattagtccgccgcttcgaggacgagaagcagtcctatcgctcgctggtgctgtcg
atgtggtcgcagcgctacggcacctacgatgatctggcgcggatcaaggaatggtcggcg
gccggcggccgcggagacgcgttgtcatga
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