Rhodopseudomonas palustris DX-1: Rpdx1_0444
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Entry
Rpdx1_0444 CDS
T01381
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
rpx
Rhodopseudomonas palustris DX-1
Brite
KEGG Orthology (KO) [BR:
rpx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rpx03016
]
Rpdx1_0444
Enzymes [BR:
rpx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Rpdx1_0444
Transfer RNA biogenesis [BR:
rpx03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Rpdx1_0444
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
2H-SAK
Motif
Other DBs
NCBI-ProteinID:
ADU42085
UniProt:
E6VJT5
LinkDB
All DBs
Position
480019..480558
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AA seq
179 aa
AA seq
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MPRLFTGLEIPAEISQTLSSLRGGLPGARWVDPDDYHLTLRFIGDIDGVTANEIASTLFR
VNRKPFEVTLQGLSSFGGKKPRAVVASVVPSKPLIELQAELERLMQRVGLDPEGRKFTPH
VTLARLRGDVSSRDVADYLSIRGYFPSKVFRAERFVLYSARASTGGGPYIVEAPYELTP
NT seq
540 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgtttgtttacgggactggagattccggccgagatcagccagaccctgtcgagt
ttacgtggtggactaccaggtgcgcgctgggtcgatccggacgactatcatctcaccttg
cggttcatcggcgacatcgacggcgtcaccgccaacgagatcgcctcgacgcttttccgg
gtcaatcgcaagccgttcgaagtgacattgcagggcctgtccagcttcggcggcaagaaa
ccccgcgcggtggtcgcttcggtggtaccgtcgaagccgctgatcgagctgcaggccgag
ctggagcggctgatgcagcgtgtcgggctcgatcccgaagggcggaaattcaccccgcac
gtcaccctggcgcggctgcgcggcgacgtctcgagccgggacgtggcggactatctgtcg
atccgcggctacttcccgtccaaggtgttcagggcggagcgattcgtcctctactccgcg
cgcgcctcgaccggtggcggtccctatatcgtcgaggcgccctacgagctgaccccctga
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