Rhodopseudomonas palustris DX-1: Rpdx1_1850
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Entry
Rpdx1_1850 CDS
T01381
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rpx
Rhodopseudomonas palustris DX-1
Pathway
rpx03420
Nucleotide excision repair
rpx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rpx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rpdx1_1850
03430 Mismatch repair
Rpdx1_1850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpx03400
]
Rpdx1_1850
Enzymes [BR:
rpx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rpdx1_1850
DNA repair and recombination proteins [BR:
rpx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rpdx1_1850
MMR (mismatch excision repair)
Other MMR factors
Rpdx1_1850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ADU43462
UniProt:
E6VMH2
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All DBs
Position
complement(1973330..1975921)
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AA seq
863 aa
AA seq
DB search
MTDPTKRQPLDVSSYQPAAGGIAARARAAAGPAYLSGLNPEQRDAVETLDGPVLVLAGAG
TGKTRVLTTRIAHILSTGRARPAEILSVTFTNKAAREMKLRLGQMLGQAVEGMPWLGTFH
SIGGRILRYHAELVQLTSNFTVLDTDDQIRLLKQLLAADNIDDKRWPARMLAGLIDGWKN
RGLTPSQVPAGEAAMFGNGRGGKLYAQYQERLKILNAADFGDLLLENIRLFREHPDVLRQ
YQNRFKFILVDEYQDTNVAQYLWLRLLSQTPATPRPTRDVETLHTSPHRGEVGERSSPGE
GRRSSESAVPPPPTPLPGGEREQAAVVATHDTPPKNICCVGDDDQSIYGWRGAEVDNILR
FDHDFPGAKVIRLERNYRSTGHILAAASHLIAHNEGRLGKTLRTEDVDGEMVTVTGAWDS
EEEARAIGEEIEQLQRQGHALNEIAILVRASFQMREFEDRFVTLGLPYRVIGGPRFYERA
EIRDALAYLRVINSPADDLAFERIVNVPKRGLGDATVQMLHDHARKRRMPLFEAARMVID
TDELKPKARGSLRGVIENFERWQVQRDALPHTELAEIVLDESGYTEMWQKDRSADAAGRL
ENLKELVRSMEEFENLQGFLEHISLVMDREGGADEDAVSVMTLHSAKGLEFETVFLPGWE
EGLFPHQRALDEQGRAGLEEERRLAHVGITRARKRAKLYFATNRRIHGTWNTTIPSRFLD
ELPAANVEITESKGGSGWGGMSGYGPSRFDNVESFGSSYSTPGWQRAQAQRSRGGGSTGG
RSGGFGESGASYSSGTTRRAPFTIEGELVAKSTGTESAFSLKDRVFHQKFGYGHVTKIDG
NKLTIAFDKAGEKKVVDSFVERV
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatccgaccaagcgccagcctctcgacgtctccagctatcagcccgccgccggc
ggcatcgccgcgcgtgcccgcgccgcggccggcccggcctatttgtccggcctcaacccg
gagcagcgcgacgccgttgagacactggacggcccggtgctggtgctggccggtgccggc
accggcaagacccgtgtgctgaccacgcggatcgcccacatcctctccaccggccgcgcc
cggcccgccgagatcctgtcggtgaccttcaccaacaaggccgcgcgcgagatgaagctg
cggctcggccagatgctcggccaggcggtcgaaggcatgccgtggctcggcaccttccat
tcgatcggcggccgcatcctgcgctatcacgccgaactggtgcagctcacctcgaacttc
acggtgctcgataccgacgaccagatccgcctgctcaaacagttgctcgccgccgacaat
atcgacgacaagcgctggccggcgcggatgctggccgggctgatcgacggctggaagaac
cgcggcctgacgccctcgcaggtgccggccggcgaagccgcgatgttcggcaacggccgc
ggcggcaagctctacgcgcagtatcaggagcggctgaagatcctcaatgccgccgatttc
ggcgacctgctcttggaaaacatccgactgttccgcgaacaccccgacgtgctgcggcag
tatcagaaccgcttcaagttcatcctggtcgacgagtatcaggacacgaacgtcgcgcag
tatctctggctgcggctgctgtcgcagacgcccgccacgcctagacccacacgcgacgtc
gagaccctgcacacctctccccatcggggagaggtcggcgagcgcagctcgccgggtgag
gggcgacggtcgtccgagagcgcggtgccccctccccccacccctctccccggtggggag
agggagcaggctgcagtcgtggcaacgcacgacacgccccccaagaacatctgctgcgtc
ggcgacgacgatcagtcgatctatggctggcgcggcgcggaggtcgacaacatcctgcgc
ttcgaccacgacttccccggcgccaaggtcatccggctggagcgcaattatcgctcgacc
ggccacattctcgccgccgcctcgcatctgatcgcgcacaatgaaggccggctcggcaaa
acgctgcgcaccgaggacgtcgacggcgagatggtcaccgtcaccggcgcgtgggattcg
gaagaggaagctcgcgccatcggcgaggagatcgagcagttgcagcgtcagggccacgcg
ctgaacgagatcgccatcctggtgcgcgcctcgttccagatgcgcgagttcgaagaccgc
ttcgtcaccctcggcctgccctaccgggtgatcggcggcccgcgcttttatgagcgcgcc
gaaatccgcgatgcgctggcgtatttgcgggtaatcaactcgccggccgacgacctcgcc
ttcgagcgcatcgtcaacgtgccgaagcgcggcctcggcgacgccaccgtgcagatgctg
cacgatcatgcccgcaagcgccgcatgccgctgttcgaggcggccaggatggtgatcgac
accgacgagttgaagccgaaagcgcgcggcagcctgcgcggcgtgatcgagaacttcgag
cgctggcaggtgcagcgcgacgccctgccccacaccgaactcgcagagatcgtgctcgac
gagagcggctacaccgagatgtggcagaaggatcgctccgccgacgccgccggccggctg
gagaacctgaaagaactcgtccgctcgatggaggaattcgaaaatcttcagggattcttg
gagcacatctcgctggtgatggaccgcgaaggcggcgcggatgaagacgccgtcagcgtg
atgacgctgcactccgccaagggcctggaattcgaaaccgtgtttctgccgggttgggaa
gaaggcctattcccgcatcagcgcgcgctcgacgaacagggccgcgccgggctggaagaa
gagcgccgcctcgcccatgtcggcatcacccgcgcccgcaagcgcgcaaagttgtacttc
gccaccaaccgccgcatccacggcacctggaacacgacgatcccgtcgcgcttcctcgac
gaactgccggccgccaatgtcgagatcaccgagtcgaaaggcggctccggctggggcggc
atgagcggctatggcccgtcgcggttcgacaatgttgaatccttcggctcgagctactcg
acgcccggctggcagcgcgcccaggcgcagcgcagccgcggcggtggcagcaccggcggc
cgcagcggcggcttcggcgaaagcggggcgtcctactcctccggcaccacccgccgcgcg
cccttcaccatcgagggcgagctggtcgccaaatccaccggcaccgagtccgcgttctcg
ctgaaagatcgcgtcttccaccagaagttcggctacggccacgtcaccaagatcgacggc
aacaaactcaccatcgcgttcgacaaggccggcgagaagaaggtggtcgacagtttcgtg
gagcgggtctga
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