Rhodopseudomonas palustris DX-1: Rpdx1_2129
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Entry
Rpdx1_2129 CDS
T01381
Name
(GenBank) YD repeat protein
Organism
rpx
Rhodopseudomonas palustris DX-1
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
SpvB
TcdB_toxin_midN
FG-GAP_3
RHS
EF-hand_1
Motif
Other DBs
NCBI-ProteinID:
ADU43726
UniProt:
E6VQ49
LinkDB
All DBs
Position
2281643..2290099
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AA seq
2818 aa
AA seq
DB search
MRRLVAVVCGVAVMSVSPSPLLADSTIGAIPGNFDVSLSGSSSYSVPIKIAPGSAGTQPQ
ISLGYDSQAFGGVVGAGWSIVGLSAITRGPRDAFVDGVPSGVNFDDKDALYLDGQRLVEV
PATASSIPGATYYRKINDDYTEIVRYGASLDRSYFRVRTKGGLTIVFGNPGNASTPSPDP
VKYDASILIRRDVAGDNLKDHVLAFAESAVIDSAGNIIELHYKQNGQGDYNIDQVLYTGH
GSIDDKAVITIERAPFASVSFTYQDAPRPLEVYLSGSLLKKDKILSDIYSCVSESAISYP
FDCKSKTASAGGGVYQVAHYHLEYKPTDTVGRLVLSKLHMFGADDATEISPTTFDYTPAN
AGWVSAPNLLPSALTLGDIDRIARGYRFAHVDPGLAGGLDLLFAAQINGKNVAFAFKNGG
PSSWKPGGQPWTESGRTDLQGKASGFAPPVPFVDEDGSDLGVIIADIDGSGRAAIIQSDV
RAKQWVQSAYLAGAKQYELHPEYNVPFLVSEDGRVASSYRFAKWSGGVGPDLIYSSGDKK
GFLKNLGPGAKLGWEAQKDELSPPISLDRETYLIDLDCSGGPPALVGPVKNADGTSAWKI
FRYNPSGWAEETDPKWLPPFPADTDPEAVREVRFEGASSKCRGFIVASAKVNLHLAAVPS
KDGWKPVGNKVPNFNLVDESGTPSKALVADLKGDGYDGIVANTLLPNGSSIRFAYSQDAA
GWHESLQFLPDAALNSLDPQKPVFSFVGPIVGAGGDDIAILNNQRVTSSTDEGRNRQFGA
FYTNDGSGFTLQPSFAPPIQIATKDKTDTGVRFVDLHGTGLPDAVYSRLVTKNGKTYLES
GAYRNTGHGWTPEGIGCTNPDEAFDTSKTTIPMKSGLCPPVPFAGAEITGNPIQFVDLNA
DGFADLIYSYRDKSNNIVTKIYFNESDGLTGRKWVDAANDPEKLARFSPPIEILPLAASG
IGDMGVRFVKFDVHQLGVLKSFREGRTQCGPIIPRPGCPVEGMWNRRAFTFDGNKWNDAG
AGYLPPVPFVTQYSSPSDHSIDLFVQLLDVTGGGLPSIVAAYQDPITGNSRNTVWTNDGT
KWIESGIRSPVELDAIYRESKTLIQLIDVSGDGLPDVVMSKGDAPDQSKTWLGTGAGWIE
ASDWKIPAEAVSSKDGDPGFRLVDANGDGYIDVLWLRPDENGQARRGLALNNGHDWKTRK
DNVVPAGISFVDGDGVDQGVRLLSVTGKGVTDIVASFGGSQTVYLNQTRRADVLSSVLDG
YGIKTKIAYQTLLEYDCSDSPSGNDCNASPSGVQSNPLGWRAYEREAAAGYPKVAPVPTT
YVVRQSSVDEADGKPPVVLDYRYGKYLMDANASRSLGFGWRESLNEFSRILTRSELIQDA
RVRPGAAVETSCVVDIDRLRLMVAKALSSSDPNDQFPKNLCASGSAVSSAWGRKIFELDK
CWTIVEDDAQGHINEFQLPEVASCTRSGRPAATLSGKVVRQAAIWKSISTSFELDGYVIS
RGTDTFTYGDAGSLSDRHGNVLSTRSELADGTSIQTDNEYEDNSAAWFLGRLTHSIVTKK
GDLVPGGANRKTETHCSRFEYYGDTGLTRLQEKNCGNPKAVKTELLRDRYGNIETSVVSA
AGEPDQVTTAGFDKFGRYAISQSDVFKHKSSVERDPRSGQPLLATDMNGLTTTFIYDGFG
RLRRQIMPTGVENITELVGPSALPKVGAGRDIAWGLTAPVSYAIRSQVGTLPEIWALFDA
KGRQLRQVTSGFATNPSSERLIFKEAEYDSLGRVMRSSVPHEAADASIRWMSNEYDALGR
VCASTAINGLRSETLFVGRPEGGGTVTVEVDPRKQLSDKDRRLLSCGKAFPSTIYNSKGL
GRRTSSTINMRKQTVVSVDAKGSVILEYDAGGRVDKITGPTGAVTVNTYNELGNKIAVSD
PDLGVWSYQYDPFDRVVWQTDAKGQITTMEYDLAGRPLRRAARDVLTTWNYDRAKHGVGK
IASVESSNGYRAEYFYDDFSRMNATSVSVDQEQFLSTSEFDSYGRAVRVSYPSGFAVRNV
YDTRGFFVKVIDAATSKTYWDAKAIDVLGRVTEETFGNGVTTFKKYRPSDERLSKITAMG
ANGRRVMDLGLDFDLIGNLTERDEAVERKKETFDYDDLNRLIAVVSADDGRSRYTYDADG
RIKFKAGLGDYQYAKHPGTIQNDGFHPFHGVEKTGDGSHTYRYDRNGNMISMPQGHLDYT
ADNRVKLIYLQEAKWSRFDYGPGGDRFRQFARKGAVSQETLYVGLFERVTDYSLSRNADY
LRPSKFSGFGGITRSRNYISNGSGIFAMVETDETYANTELFEPRNPKSRWFGKQTKTEAW
YIHADQLGSTLRVTDQDGRIRERFWYDPWGAATKRENNRPGKGASERIAGTWTRGFTGHE
QLDQFALVHMNGRMYSSTLGLFTSVDPINQMATDTQSGNGYLYTRANPLRYTDPTGYFSL
GDIGRAIEGAAHAVGGAIGSAWEGIKHFGGEVGKWFSENWRIVVVVIVVIVIEVVTVGAA
TPALGAVGAGILGGMAAGAAGGAFGAALYGGSTDDIIGAAIKGAVIGAFAGAASAEANAY
FGAVGTQTTTASEVGSIATHGAISGARQAAEGGNFWTGFEAGLIATAVSTYGPQDLSHTG
NVVKSSVVGGTTSAINGEKFANGAILGAFSADFRTWVEGGSSLVGKIWALPNTVLGLAVG
LVEYGAGLLMGTHPEWTFGNNSLQLLNAPWGTGGAITFGNVEIFNNVDPKDRVPVYGNSS
NTVVIGQHEEGHTYQYERLGPLFAPAYFMFGGIKDTNGFERSADKYGRGEGGAFSGFR
NT seq
8457 nt
NT seq
+upstream
nt +downstream
nt
atgcgaagactggtagccgtcgtgtgcggtgtcgctgtcatgagcgtatcgccgtctccc
ttgttggctgactcgaccatcggggcgattccaggaaacttcgacgtgtcactatcagga
agcagcagctattccgttccaattaagattgcgcccggttcggcaggcacacagccacaa
atctctctggggtatgatagtcaggcgtttggcggcgtcgttggtgccggttggtcgata
gtaggtctgtccgcgataacgcgcggaccgcgtgatgctttcgtcgatggtgttccttcg
ggagtcaatttcgacgacaaggatgcactctatctcgacggtcagagacttgtcgaagtt
ccggcaactgcgtcgtcaataccaggcgcgacatattaccgaaagatcaacgacgattac
accgagatcgttcggtatggagccagtcttgatcgatcctattttcgggttcgtaccaag
ggcggtctcacgatcgtgtttggtaatccgggtaatgcatcgactccgtcaccggatccg
gtcaagtatgatgcatcgatcctgatccgtcgcgacgtcgcgggcgacaatctcaaggac
cacgttcttgcgttcgccgaaagcgccgtaatcgattcagctggaaacatcattgaactc
cactacaagcagaacggccagggtgactacaacatcgatcaggtgctctacacgggccat
ggctcgatcgacgacaaggcggtgattacgatcgaacgtgcaccgtttgcgagcgtgtcc
tttacataccaggacgctcctcgaccactcgaagtctacctgtctggtagtctgctaaag
aaagacaagattctgtccgatatatactcctgcgtctcggaaagtgcgatctcgtaccca
ttcgactgcaaatcgaagacggcgagcgccggtggcggcgtttatcaagtcgctcactat
caccttgagtacaagccgacagatacagtaggcagacttgttctttccaaactccacatg
ttcggagcagacgacgccactgagatttctccgacgaccttcgactatacgccagcaaat
gcgggttgggtttccgcgccgaacctcctgccatcggctttgaccctcggagatattgac
cgaatagccagaggctaccgtttcgcccacgtcgatcccggcctggcgggcggactcgat
ttactctttgcggctcagattaacggaaagaacgttgcgtttgcattcaagaacggcggc
ccctcatcgtggaagccgggtggtcagccctggacggaaagcggaagaactgatctccag
ggaaaagcatctggttttgcgcctcccgtgccgttcgtcgacgaggatggctccgatctt
ggtgtgattattgcggatattgatggttccggaagggcggcgatcattcaaagcgatgtt
cgcgcgaagcagtgggtccagtcggcttaccttgccggcgcgaaacagtacgaacttcac
ccggaatacaatgtaccgtttctcgtcagcgaggatggaagggttgcgtcaagctatcgg
ttcgcgaagtggtcgggtggtgtcggtccggacttgatatacagctcgggggacaaaaag
ggctttttgaaaaacctgggaccgggcgcgaagctgggctgggaagcacaaaaagatgag
ctctctccaccaatttcgctcgatcgagagacctatctgattgacctcgactgttcgggg
gggccgccagctctggttgggccggtcaaaaatgcagacggaacctcggcatggaagatc
tttcgttataacccgtcaggttgggcggaggagaccgatccaaaatggctgccgccgttc
cctgcagataccgacccggaagcggtcagggaagtgcgctttgagggcgcgtcttcgaag
tgtaggggatttatcgttgcttctgcaaaagtcaatctgcatctggcagccgttccgagc
aaggacggctggaagccggttggcaacaaggtgccaaacttcaatctcgttgatgagagc
gggacgccttcaaaagcgcttgttgcagatctgaagggcgacggatacgacggaatagtg
gcgaacacgctgttgccgaacggctcgtcgatccggtttgcttattctcaggatgcagcc
ggatggcatgagtcgctgcaattcttgcctgatgcggcgttgaatagtctggatccgcaa
aagcccgtattctcctttgtcggtccaatagtcggcgcgggcggcgacgatattgctatc
ctcaacaaccaacgcgtgacgagctcgacggacgagggacgcaatcgtcagtttggagca
ttctacacgaatgatggcagcggattcacgcttcaaccgtcatttgcaccaccaatacag
atcgcgacgaaggacaagactgacactggagtacgcttcgtcgatctccacggcactggc
ttgcctgacgcagtatacagccgcctcgtcaccaagaatggaaaaacctatctggagagc
ggcgcctatcgaaacaccggccatggctggacaccggaggggatcggctgcaccaatcca
gatgaggcgtttgacacctccaaaacgactatcccgatgaagagtggactttgtccgcct
gtgccctttgcgggggccgaaataacgggcaatccgatccagtttgtcgacctgaatgct
gatggcttcgctgatctgatctacagctatcgtgacaagtcgaacaatattgtcacaaag
atctatttcaacgaaagtgacggtttgactggaaggaagtgggtagacgcagcgaatgat
ccagaaaagctcgcgcgcttctctccacccattgaaatccttcctttagccgcttccggc
atcggagacatgggggtgcggttcgtcaagtttgatgttcatcagcttggtgttctcaaa
agcttccgggaaggccgaacgcaatgcggtcccattattccgcgtccgggttgcccggtg
gaaggtatgtggaacagacgagctttcacgtttgacggcaacaaatggaatgacgctggt
gccggctacctcccgccagtcccttttgtgacgcaatattcctcacctagcgaccactcg
atcgacctgtttgttcaactgctggacgttaccggcggtggcttgccatcgattgtcgca
gcttatcaggatcctattacgggcaactccaggaacacagtttggacaaacgatggcaca
aagtggatcgagagcggaatcaggtctcccgtcgaactcgatgccatatatcgtgagtca
aaaacgctaattcagcttattgatgtcagcggcgacggcttgcccgacgttgtgatgtca
aagggagatgcaccggatcagtcgaagacgtggctcggaaccggggcaggctggattgaa
gcaagcgactggaagattccagccgaggctgtctcctctaaggacggagatccgggcttt
cgactagtcgatgccaatggtgatggttacatcgacgtcctgtggctaaggccggatgag
aatggacaggccagacgtgggctggcgctcaacaacgggcacgactggaaaacgcggaaa
gacaacgtggtgccggctggcatcagctttgtcgatggcgatggcgtcgatcagggcgtg
aggctgctgagcgtcacgggaaaaggtgtcaccgacattgtcgcctcgtttggaggctcg
caaactgtatatctgaaccagacccggcgagccgatgtcctgtcttccgttctggatggc
tacggcatcaaaacgaagatcgcatatcagacgttgctggaatacgactgttccgactca
ccatccggaaacgactgcaatgcctcgccctcgggggtccaatcgaaccccttgggctgg
cgcgcctatgagcgcgaggcagcagccggctatcccaaggtggcgcctgtgccgaccact
tacgttgtccggcaatcaagcgttgatgaggccgatggcaagccgccggttgttctcgat
tatcgctatggcaagtatctgatggatgccaacgccagtcggtcccttggtttcggatgg
cgtgagagcctgaacgagttcagcaggatcctcacgcgcagcgaactgatccaggatgcg
cgcgttcgacccggtgcggcagtcgagacatcatgcgtcgtcgatattgatcggttgaga
ttgatggtggcgaaggcgctttcaagcagtgaccctaacgatcaatttccgaagaacctg
tgcgcgtcgggaagcgctgtcagctccgcctgggggcggaagatctttgaactggacaag
tgctggaccattgtcgaggacgacgcacaggggcatatcaacgaatttcagcttcccgaa
gtggcgtcatgtacccgctccgggcgtcctgccgctacgctgtcgggtaaagtggttcgt
caggccgccatctggaagtcaatttcaacatcgtttgagctggacggatatgtcatttca
cgagggacagatacctttacctacggcgatgcgggaagtctttccgaccggcacggcaac
gtcctgagtacccggagcgaactcgcagacggcacctctatccagactgacaacgagtat
gaagacaattcggcggcctggttcctgggacggctgacgcactcgattgtcacaaagaaa
ggagaccttgtaccggggggagcgaaccgcaagacggaaacgcactgctccaggtttgaa
tactatggagacaccggactcaccaggttgcaggaaaaaaattgcgggaacccgaaggcc
gtcaaaaccgaactattgcgcgatcgatatggaaacatagagaccagcgtcgtttctgcg
gcaggtgagcctgatcaggtcacgactgccggcttcgataaatttggacggtacgccatc
tcccaaagtgatgttttcaagcacaagtcgtcagtcgaacgcgatccgaggtccggtcaa
ccgctgctcgctacagacatgaatgggctcacgacgacattcatctatgacggatttgga
cgactacgacgacaaatcatgccgacgggagtcgaaaacattactgaactggttggtcct
tctgcacttcccaaagtcggtgcaggccgtgacatcgcctggggacttactgcgccggtc
agctacgctatcagatctcaggtgggtacgcttccagagatctgggcattgtttgatgcg
aagggacgtcagttgcggcaggtcacgagcggctttgcaacaaacccgtccagcgagcgc
ctcattttcaaggaagccgagtacgactcgcttggacgggtgatgcgatcgtctgtgccg
catgaagccgcggacgcgagtattcgctggatgagcaatgaatatgatgcgctcggccgc
gtatgcgcgtcgactgcgatcaatggactgcgttccgagacgctttttgtcggaagacca
gaaggcggcggtaccgtcacagtggaagtcgatccacgaaagcaattgagcgataaagat
cggcggttgctgtcgtgcggaaaggcatttccttcgactatctacaatagcaaggggctt
gggcggcggacttcctcaacaataaacatgcgcaagcagacggtcgtgtctgttgatgcc
aagggcagtgtgattcttgaatatgatgctggcggacgcgtggacaagattaccgggccg
actggcgccgtaactgtcaatacttacaacgaactcggcaacaagattgctgtttcagat
cctgacctcggagtctggagctaccaatatgatccgttcgaccgcgtcgtctggcaaact
gacgccaaaggtcagattacgacgatggaatatgacttagcaggtcgacccctccggcgc
gcagctcgggatgtcttgacgacgtggaactatgaccgagcgaaacacggagtgggtaaa
attgcgtcggtggaaagttcgaatggttatcgcgcggagtacttctatgacgacttcagt
cgaatgaacgctacgtctgtatcggtcgatcaagagcaattcttgtcgaccagtgagttt
gattcttatggacgtgctgtccgcgtctcttatccgagcggatttgctgtcaggaatgtt
tacgataccaggggattttttgtcaaagtaatagatgctgcgacatcgaagacttattgg
gacgcaaaagcgatcgacgtcctggggcgcgtgacggaagagacgttcggcaatggcgta
actacgtttaaaaaatacagaccctcggacgaacgcttatctaaaatcacggccatgggg
gcgaacggtagacgagtgatggatctcgggctggattttgatttgatcggaaatctcacg
gagcgagacgaagcagttgaacggaaaaaggagactttcgattacgatgacctcaaccgc
ctgatcgctgtcgtgagcgcagacgacggcaggtcaaggtacacttatgatgccgacggg
cgcatcaagttcaaagccggattgggagactatcaatacgccaaacatccaggcaccata
caaaacgatgggtttcatccgttccatggcgtggagaagacaggagacggatcccacacc
tatcgatatgaccggaacggcaacatgatttcaatgccacaggggcatctcgactacaca
gcagacaaccgcgtcaagttgatctatctccaagaggcgaaatggtcgcgcttcgattat
ggtcctggtggcgatcgtttccggcaatttgcgcgcaagggtgccgtttcgcaagaaacg
ctttacgttggtctgttcgaacgggtaaccgactattcgctgtctcgaaacgctgattat
cttcggccgtcgaaatttagcgggttcggcgggattacgcgtagccgaaactacatcagc
aatggatccggcatctttgcgatggtcgaaaccgacgagacgtacgcaaatactgaactc
ttcgagccgcgtaatccgaaatcacggtggtttggaaagcaaacgaaaaccgaagcctgg
tacattcatgcagatcagctgggctcgactctgcgcgtgacagaccaggatggccgaatt
cgcgaacgattctggtacgatccgtggggcgcggcgaccaagcgcgaaaacaatcgtccg
ggcaagggagcgtcggagcggatagcaggtacatggacgcgcggatttaccgggcacgaa
caactagatcagtttgccctagtgcacatgaatgggcgaatgtatagctctactcttggc
ctgtttacctctgtcgatccgatcaatcagatggccacagatacacagagcggcaacggt
tatctctacacgcgcgcaaatccgctccgatacaccgatccgaccggctacttctcactt
ggtgacattggcagagctattgaaggtgctgcacacgctgtcggcggtgccatcggttct
gcctgggagggcataaagcattttggtggcgaggtcgggaaatggttcagtgaaaactgg
cgcatcgtcgtcgtcgttatcgttgttatcgtgatcgaggttgtaacagtcggcgctgct
acaccggcgctaggtgcggtgggggcgggaattcttggtggaatggccgctggagccgcc
ggcggggcgttcggagccgcgttgtacgggggcagtacggacgacattatcggtgctgca
atcaagggtgcggtaattggtgcttttgcgggcgctgcgtcggcggaagccaatgcttac
ttcggggcagttggtacgcagacgacaaccgcatccgaggtcggctcgatcgccacgcat
ggcgcgatttccggcgctcgtcaggctgcggagggtggcaatttctggaccggattcgag
gccgggctcattgccacggcagtcagtacatatggtccccaggatttgagccatacaggt
aacgtcgtaaagtccagtgtggttggcggtacgacttcggctatcaatggtgagaagttt
gcaaatggagcaatcctcggcgccttcagtgccgatttcaggacctgggtcgaaggtggc
tcttcgttggtcggcaagatatgggcactcccgaataccgtgcttggcctcgcagttgga
ttggttgagtatggtgctggcttgctcatgggtacccatcccgaatggacgttcgggaat
aattccctgcagttgctgaacgcgccgtggggtacgggcggagcgatcactttcggcaac
gttgaaatattcaacaacgtggatcccaaggatcgggtccccgtctatggaaactccagt
aatacggttgtaattggccagcacgaagaggggcacacttatcagtatgagaggttaggg
ccactcttcgcaccggcatacttcatgtttggcgggatcaaggatacaaacggcttcgag
agatcggccgacaaatatggacgcggcgagggtggggcgttctctggcttccgatga
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integrated database retrieval system
