Rhodopseudomonas palustris DX-1: Rpdx1_2166
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Entry
Rpdx1_2166 CDS
T01381
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rpx
Rhodopseudomonas palustris DX-1
Pathway
rpx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rpx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Rpdx1_2166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpx03021
]
Rpdx1_2166
03400 DNA repair and recombination proteins [BR:
rpx03400
]
Rpdx1_2166
Enzymes [BR:
rpx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Rpdx1_2166
Transcription machinery [BR:
rpx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Rpdx1_2166
DNA repair and recombination proteins [BR:
rpx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Rpdx1_2166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
RnfC_N
DUF2130
Motif
Other DBs
NCBI-ProteinID:
ADU43762
UniProt:
E6VBU2
LinkDB
All DBs
Position
2331311..2335513
Genome browser
AA seq
1400 aa
AA seq
DB search
MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGQLLDMTLKDLERILYFEYYVVLEPGLTDLKERQLLSEEEYLRAQDQYGQDSFTA
MIGAEAIRELLKGLELEKIDAQLRAEMAETDSDIKHKKLAKRLKIVEAFRYSGNKPEWMI
LTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSIMREGLPGEGKVFGDLAELEHALY
SKVIHLHTKIRYRWHWTNEEGQETVRLLETTAGRILLGQVLPKSPKLPFDVINKLMTKRE
ISGVIDQVYRHCGQKETVIFCDRIMALGFFNAFKAGISFGKDDMVVPGSKWKIVDSTRTL
AKDFEQQYNDGLITHGEKYNKVVDAWSKATEEIAKEMMKEISAVRKAPDGSEQQVNSIYM
MAHSGARGSPAQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITQADCGTSLGIKMRAIVDAGTVVASLGSRILGRTA
GEDVRDPATNEIIVKRGDLMEERDVEAIHQAGVQEVKIRSALTCELVNGICGKCYGRDLA
RGTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQINEQSVIESNFDGKIVIKNRAI
ARNGEGHNVAMVRNMVIAIVDPDGTERATHRIQYGARVHVDEGDMVKRGQRIAEWDPYTR
PILTEVEGTIDFEDLIEDQSISETLDESTGIAKRIVIDWRSSRGGADLRPAIVIKGKDGK
VLKLARGGDARYMLSVDAILSVDVGAQVKPGDILARISTESAKTRDITGGLPRVAELFEA
RRPKDAAIIAEIAGTIRFGRDYKNKRRLSIEPLDKNEEAREYLIPKGKHIHLQDGDVVEK
GDFIVEGNPAPHDILAIKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKIEI
TDQGDTDMISGEQVDKIEFNAVNAKAVEEGKKPATGNPVLLGITKASLQTRSFFSAASFQ
ETTRVLTEAAVNGKVDPLEGLKENVIVGRLIPAGTGASMAKIREVAMKRDRLILDEREKQ
AAIVPAAAPEAEPLSLPPVE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagagattatgaatctgttcaatccgacgacgccggctcaggtcttcgaccag
atccggatttcgatcgcgtcgccggagaagattctgtcgtggtcttacggcgagatcaag
aagccggaaaccatcaactaccgcaccttcaagcccgagcgcgacggcctgttctgcgcc
cgcatcttcgggccgatcaaggattacgagtgcttgtgcggcaagtacaagcggatgaag
tacaagggcatcatctgcgagaagtgctcggtcgaagtgacgctgtcgcgcgtccgtcgc
gagcgcatgggccacatcgagctggccgcgccggtcgcccacatctggttcctgaagtcc
ctgccgtcgcggatcgggcaactgctcgacatgacgctgaaggacctcgagcggattctg
tacttcgaatactacgtcgtgctggagccgggcctcaccgacctcaaggagcgtcagctc
ctgtcggaggaggaatacctgcgcgcccaggatcagtacggccaggattcgttcaccgcc
atgatcggcgccgaggcgatccgcgaactgctgaagggtctcgagctcgaaaagatcgac
gcgcagctccgcgccgagatggccgagacggattcggacatcaagcacaagaagctcgcc
aagcgcctgaagatcgtcgaagcgttccgctattccggcaacaagccggagtggatgatc
ctcacggtcgtgccggtgatcccgccggacctgcgtccgctggtgccgctcgacggcggc
cggttcgcgacctcggacctcaacgacctgtatcgccgcgtcatcaaccgtaacaaccgc
ctgaagcggctgatggagctgcgcgcgccggacatcatcatccgcaacgaaaagcgcatg
ctgcaggaggccgtggacgcgctgttcgacaacggccgccgcggccgcgtcatcaccggc
gccaacaagcgcccgctgaagtcgctcgccgacatgctgaagggcaagcagggccggttc
cgtcagaacctgctcggcaagcgcgtcgactattcgggccgttcggtgatcgtggtcggt
ccggaactcaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttcaag
ccgttcatctattcgcggctcgatgccaagggtctgtcgaccaccgtcaagcaggccaag
aagctggtcgaaaaggagcggccggaggtttgggacatcctcgacgaggtgatccgcgaa
catccggtgctgctgaaccgcgcgccgaccctgcatcgcctcggcattcaggcgttcgag
ccggtgctgatcgagggcaaggcgatccagctccatccgctggtttgctcggcgttcaac
gccgacttcgacggcgaccagatggccgtgcacgttccgctgtcgctcgaagcgcagctc
gaagcgcgcgtgctgatgatgtcgaccaacaacatcctgcatccggcgaacggccagccg
atcatcgtgccgtcgcaggacatcgtgctcggcctgtactacctgtcgatcatgcgggaa
gggctgccgggcgagggcaaggtgttcggcgatctcgccgagctcgagcacgcgctgtat
tcgaaggtcatccacctccacaccaagatcaggtatcgctggcactggaccaacgaggag
ggccaggagacggtccgtctgctggagaccaccgccggccgcatcctgctcggccaggtg
ctgccgaagtcgccgaagctgccgttcgacgtcatcaacaagctgatgaccaagcgcgag
atctccggcgtcatcgatcaggtctatcgccactgcggtcagaaggagacggtgatcttc
tgcgaccggatcatggcgctcggcttcttcaacgcgttcaaggccggcatctcgttcggc
aaggacgacatggtcgtgccgggctcgaagtggaagatcgtcgactcgacccgcaccctg
gcgaaggatttcgagcagcagtacaacgacggtctgatcacccacggcgagaagtacaac
aaggtggtcgacgcctggtcgaaggccaccgaagaaatcgccaaggagatgatgaaggag
atctccgcggttcggaaggcgccggacggctccgaacagcaggtcaactcgatctacatg
atggcccactccggtgcgcgtggttcgcccgcgcagatgcgtcagctcgccggtatgcgc
ggcctgatggccaagccgtcgggtgagatcatcgagacgccgatcatctccaacttcaag
gaaggtctgtcggttctcgagtacttcaactcgacccacggcgcccgtaagggtctggcc
gacaccgcgctgaagaccgcgaactcgggttacctgacccggcgtctggtcgacgtggcg
caggactgcatcatcacgcaggccgactgtggcacctcgctcggcatcaagatgcgggcg
atcgtcgacgccggcaccgtggtcgcttcgctgggcagccgtatcctcggccgcaccgcg
ggcgaggacgtgcgcgacccggccaccaacgagatcatcgtcaagcgcggcgatctgatg
gaggagcgggacgtcgaggcgatccaccaggccggcgtgcaggaagtgaagatccgctcg
gcgctgacctgcgagctggtcaacggcatctgcggcaagtgctacgggcgcgatctcgcc
cgcggcaccccggtcaaccacggcgaggcggtcggcgtgatcgcggcgcagtcgatcggc
gagccgggcacccagctcacgatgcgtaccttccacatcggcggcgcggcgcagatcaac
gagcagtcggtgatcgagtcgaacttcgacggcaagatcgtgatcaagaaccgcgccatc
gcccgcaacggcgaaggccacaatgtcgcgatggtccgcaacatggtgatcgcgatcgtc
gatccggacggcaccgagcgtgcgacccatcgcatccagtacggcgcgcgcgtgcacgtc
gacgagggcgacatggtcaagcgtggccagcgcatcgccgagtgggatccgtacacccgg
ccgatcctgaccgaggtcgagggtaccatcgacttcgaggatctgatcgaggatcagtcg
atctccgaaacgctcgacgagtcgaccggtatcgccaagcgtatcgtcatcgactggcgt
tcgagccgcggcggcgcggacctgcgtccggcgatcgtgatcaagggcaaggacggcaag
gtgctgaagctggcgcgcggcggcgacgcccgttacatgctgtcggtcgacgccattctg
tcggtcgacgtcggcgcccaggtcaagcccggcgacatcctggcgcgtatctcgaccgag
agcgccaagacccgcgacatcaccggcggtctgccgcgggtggcggagctgttcgaagcg
cggcggccgaaggatgcggcgatcatcgccgagatcgccggcaccatccggttcggtcgc
gactacaagaacaagcgccggctctcgatcgagccgctcgacaagaacgaggaagcgcgc
gagtacctgatcccgaagggcaagcacatccacttgcaggacggcgacgtcgtcgaaaag
ggcgacttcatcgtcgagggcaatccggcgccgcacgacatcctggcgatcaagggcatc
gaggaactcgcggcctatctggtcaacgaaatccaggaggtctatcgactccagggcgtg
ttgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaagatcgagatc
accgaccagggcgacaccgacatgatctcgggcgagcaggtcgacaagatcgagttcaac
gcggtcaacgccaaggcggtcgaggagggcaagaagcccgccaccggcaacccggtgctg
ctcggcatcaccaaggcgtcgctgcagacccggtcgttcttctcggcggcttcgttccag
gaaaccacgagggtgctcaccgaagccgcggtcaacggcaaggtcgacccgctggaaggt
ctcaaggagaacgtcatcgtcggccggctgatcccggcgggcaccggtgcctcgatggcc
aagatccgcgaagtggcgatgaagcgcgaccggctgatcctcgacgaacgcgagaagcag
gcggcgatcgttccggccgccgcgccggaagccgaaccgctgtcgctgccgccggtagag
tga
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integrated database retrieval system
