Rhodopseudomonas palustris DX-1: Rpdx1_2275
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Entry
Rpdx1_2275 CDS
T01381
Name
(GenBank) Serine-type D-Ala-D-Ala carboxypeptidase
KO
K07258
serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:
3.4.16.4
]
Organism
rpx
Rhodopseudomonas palustris DX-1
Pathway
rpx00550
Peptidoglycan biosynthesis
rpx01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rpx00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Rpdx1_2275
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rpx01002
]
Rpdx1_2275
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rpx01011
]
Rpdx1_2275
Enzymes [BR:
rpx01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
Rpdx1_2275
Peptidases and inhibitors [BR:
rpx01002
]
Serine peptidases
Family S11: D-Ala-D-Ala carboxypeptidase A family
Rpdx1_2275
Peptidoglycan biosynthesis and degradation proteins [BR:
rpx01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
Rpdx1_2275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S11
Beta-lactamase2
SPOR
Motif
Other DBs
NCBI-ProteinID:
ADU43867
UniProt:
E6VCR2
LinkDB
All DBs
Position
complement(2443649..2445379)
Genome browser
AA seq
576 aa
AA seq
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MHRNISFRSRALRVCVLGLATISAAVIFTTDTADARRRHKNHARHHVERNAYNPAFASII
VDGNSGAVLSATNPDSQRHPASLTKIMTLYLLFERLEQGKLSLDSEMEVSEFASGQAPTK
LGLRPGQKLRVEDAIKGLVTRSANDAAVVIAETIGGSEAEFARMMTRKARALGMSRTVYR
NASGLPNSEQVTTARDQSILGRAVQDRFPRYYRYFSTSVFAYRGQSIRNHNRLLGSVEGV
DGIKTGYTRASGFNLVTSMHRGNRFLVGVVLGGRSGGSRDAIMRNLLAENLEKGATRRTV
AAITERSSGSDDIEVAETSRSAPPVQVQGAVQVASAAPETVLPTPRPAAPLTRSAAAPEP
KPEPGPFNSGTIETKPLVIVPGSAEPMKPVRVKTVQVKSAPIKLASAVAAPPVTSAIPPQ
RRDPAETSGTAIARAETRPETIPQPAGHGTGQGVLGVLPASSVPSRNSQALAYADTAAAP
APAVQQQGAIKTVAHTGWIIQVGALESENEARKRLEAAREQASGLLGKADPFTETVTTKG
DRKLYRARFAGLERDEAEAACRKLKRSDISCFTIKN
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgcaccgcaatatttctttccgctcgcgcgcgctgcgagtttgcgtgctcggcttggcc
acgatctccgctgcggtgatcttcacaaccgataccgccgatgcgaggcggcgccacaag
aatcacgcccgccaccacgtcgaacgcaacgcctacaatccagccttcgcctcgatcatc
gtcgatggcaattcgggcgcggtgctcagcgccaccaacccggacagccagcgtcacccc
gcatcgctgaccaagatcatgacgctgtatttgctgttcgagcggctcgaacagggcaag
ctttcgctcgacagcgaaatggaagtgtccgaattcgcctccggacaagccccgaccaag
ctcggactgcgcccgggccagaagctgcgggtcgaggacgcgatcaagggactggtgacc
cgctcggcgaacgacgccgccgtggtgatcgccgagacgatcggcggcagcgaggctgaa
ttcgccaggatgatgacccgcaaggcacgcgccctcggcatgtcgcgcaccgtgtatcgc
aatgcatccggcctgcccaacagcgagcaggtcaccaccgcccgggaccagtcgatcctc
ggccgcgccgttcaggatcgtttcccacgctattatcgctacttctcgaccagcgtattc
gcttaccgcggccagtcgatccggaaccacaaccggctgctcgggagcgtcgaaggcgtc
gacggcatcaagaccggctacacccgggcctccggattcaatcttgtcacctcgatgcac
cgcggcaaccgcttcctggtcggcgtggtgctcggcggtcgcagtggcggctcgcgcgac
gccatcatgcgcaatctgctcgccgagaatctggaaaagggcgcgacccgccggaccgtc
gccgccatcaccgagcgctcgtcgggttccgacgacatcgaggtcgcggagaccagccgc
agcgctcccccggtccaggtgcaaggtgcggttcaggtcgcatccgccgcgcccgaaacg
gtgcttccaacgccccgccccgccgctccgctcacccgttccgccgccgccccagaacca
aagcccgagcccggcccgttcaacagcggcaccatcgagaccaagccgctggtgatcgtc
cccggctccgccgaaccgatgaagccggtccgggtcaagacggttcaggtcaagtctgct
ccgatcaagctcgcttccgcggtggccgcgcccccggttaccagtgcaatcccgccgcag
cgtcgcgatccggcggaaacctccggaaccgccatcgcccgcgccgaaacccggccggaa
acgatcccgcagcccgccggtcacggcaccggccaaggcgtcctcggcgtgcttccggcc
tccagtgtgccgtctcgaaattctcaagccctggcctatgccgacaccgctgccgcgccg
gctcccgccgtccaacagcaaggcgcgatcaagacggttgcccataccggctggatcatc
caggtcggcgctctggaaagcgaaaacgaggcgcgcaagcggctggaagcggcgcgggaa
caagccagcggtctgctcggaaaggccgatcctttcaccgagaccgtcaccaccaaaggc
gatcgcaagctgtatcgcgcccggttcgccggcctggagcgcgacgaagccgaggcggcg
tgccgcaagctgaagcgctccgatatctcctgcttcaccatcaagaactga
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