Rhodopseudomonas palustris DX-1: Rpdx1_2872
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Entry
Rpdx1_2872 CDS
T01381
Name
(GenBank) DNA gyrase, A subunit
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
rpx
Rhodopseudomonas palustris DX-1
Brite
KEGG Orthology (KO) [BR:
rpx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpx03032
]
Rpdx1_2872
03400 DNA repair and recombination proteins [BR:
rpx03400
]
Rpdx1_2872
Enzymes [BR:
rpx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
Rpdx1_2872
DNA replication proteins [BR:
rpx03032
]
Prokaryotic type
DNA Topoisomerases
Rpdx1_2872
DNA repair and recombination proteins [BR:
rpx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Rpdx1_2872
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
SIS
Motif
Other DBs
NCBI-ProteinID:
ADU44455
UniProt:
E6VK85
LinkDB
All DBs
Position
complement(3060115..3062856)
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AA seq
913 aa
AA seq
DB search
MSDKDDEKPGEPLAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILY
GMYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFG
SVDGDMPAAMRYTESRLTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNG
AGGIAVGMATNIPPHNLGEVIDACVALIDDPALTIDDLNKIVPGPDFPTGGIILGRSGIR
SAYQTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISD
LRDESDRDGFRVVIELRRDAVPEVVLNQLYKFTPLQTNFGANMVALEGGRPQLMNLKDLL
TVFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLM
SRDWPAADVAAMITLIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEISDELD
KLAVEIADYLEILRSRARVQTIVKDELGAVKAEFATPRKTVIVEQEGEVEDEDLIQREDM
VVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQV
YKEKVWRLPLAPPNGRGKALINILPLEQGERITTIMPLPEDEASWSELDVMFATTGGNVR
RNKLSDFVDVRRSGIIAMKLDDGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSG
RTSMGVRGIALSSGDKVISLSILRHFEATPAERSTYLKQSGAIRRAATGEESEPIETPEV
EAEEGDTSAALSQERYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNG
RNGKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSVER
IPETDDGDNGNGG
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgacaaagacgacgagaagcccggggagccgctggcgccctcggatattcgcccc
gtatccattctcgacgagatgaagcgcagctatctcgattacgcgatgagcgtgatcgtg
gcgcgagcgctgccggatgcgcgcgacgggttgaagccggtgcatcgccgcatcctctac
ggcatgtacgagaacggcttcgaatggaacaagccgtatcgcaagtcggcccgcaccgtc
ggcgacgtcatcggtaagtatcacccgcacggcgaccagtcggtgtacgacgcgctggtc
cgcatggcgcaagacttctcgatgcgggtgccgctgatcgacggtcagggtaatttcggc
tcggtcgacggcgatatgccggcggcgatgcgatacaccgaatcccgtctgaccaagatc
gcgcagacgctgctcgacgacatcgacaaggacaccgtcgacttccagccgaattacgac
aattcggaacgggagccgcaggttcttcctgccaagttcccgaaccttctggtcaacggc
gccggcggcatcgcggtcggcatggcgaccaacatcccgccgcacaatctcggcgaggtg
atcgacgcctgtgtcgcgctgatcgacgacccggcgctgacgatcgacgatctcaacaag
atcgtgccggggccggacttcccgaccggcggcatcattctcggacgctcgggcattcgc
tccgcttatcagaccggccgcggctcgatcgtgatgcgcggcaaggtcgagatcgagacc
gtccgcaaggaccgcgaagcgatcatcgtcagtgaaattccgtaccaggtgaacaaggcg
acgatggtcgagcgcatcgccgagctggtgcgcgagaagaagatcgaaggtatcagcgat
ctgcgcgacgagagcgatcgcgacggtttccgcgtggtgatcgagctgcgccgcgacgcg
gtgccggaagtggtgctcaaccagctctacaagttcacgccgctgcagaccaatttcggc
gccaacatggtggcgctggaaggcggccggccgcaactgatgaacctgaaggatctgctg
acggtcttcgtcgcgttccgcgaacaggtcgtcacccgccgtaccaaattcctgctcaac
aaggcgcgcgatcgcgcgcacatcctggtcggcctcgcgatcgcggtggcgaatatcgac
gagatcatccgggtgatccgtaattcgccagatccgaacacggcgcgcgagaccctgatg
tcgcgcgactggccggcggccgacgtcgcggcgatgatcacgctgatcgacgatccgcgc
cacaagctcaatgaggacggcaccgcgcggctgtcgttcgagcaggccaaagccattctc
gatctgcggctgcagcgcctcaccgcgctgggacgcgaagaaatttccgacgagctcgac
aagctcgcggtggaaatcgccgactatctggagatcctgcgctcgcgcgcccgggtgcag
acgatcgtcaaggacgagctcggcgccgtgaaggctgagttcgcgacgccgcgcaagacc
gtgatcgtcgagcaggaaggcgaggtcgaagacgaagacctgatccagcgcgaggacatg
gtggtgaccgtgtcgcacgccggctacgtcaaacgggtgccgctgtcgacctatcgggcg
cagcgccgcggcggcaagggccgctccggcatggcgacccgcgaggaggatttcgtctcg
aggctgttcgtcgcttcgacgcatacgccggtgctgttcttctcgtcgcgcggccaggtc
tacaaggagaaggtgtggcggctgccgctggcgccgccgaacggccgcggcaaggcgctg
atcaacatcctgccgctggagcagggcgagcgcatcaccacgatcatgccgctgccggaa
gacgaagcctcgtggagcgagctcgacgtgatgttcgccaccaccggcggcaatgtccgc
cgcaacaagctgtcggacttcgtcgacgtccgccgctccggcatcatcgcgatgaagctc
gacgacggcgaggcgatcgtcgacgtccagatctgcaccgagcgcgacgacgtgctgctg
accgccgccggcggccagtgcatccgcttcccggtgccggacgtgcgggtgttcagcggc
cgcacctcgatgggcgtgcgcggcatcgcgctgtcgtccggcgacaaggtgatctcgctc
agcatcctgcgccacttcgaggcgacgccggcggaacgctcgacctatctgaagcagtcc
ggcgcgattcgccgtgccgcgaccggtgaggagagcgagccgatcgagacgccggaagtt
gaagccgaggagggcgatacatctgcggcgctgtcgcaggagcgctacgccgagatgtcg
gcgtccgagcagttcgtgctgacgatctcggagaacggctacggcaagcggacctcgtcg
ttcgagtaccgcaccaccggacgcggcggcaaaggcatcgtggcgatgtcggtcaacggc
cgcaacggcaagctggtggcgtcgttcccggtcgaggattccgaccagatcatgctggtc
accgacaacggccagctcatccgctgcccggtcgaaggcatccgcgtcgccggccgctcc
acccagggcgtgatcgtgttcaacaccgccgacgacgagaaggtggtgtcggtcgagcgc
atcccggagaccgacgacggcgacaacggcaacggcggctaa
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