Rhodopseudomonas palustris DX-1: Rpdx1_3166
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Entry
Rpdx1_3166 CDS
T01381
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain acyl-CoA synthetase [EC:
6.2.1.3
]
Organism
rpx
Rhodopseudomonas palustris DX-1
Pathway
rpx00061
Fatty acid biosynthesis
rpx00071
Fatty acid degradation
rpx01100
Metabolic pathways
rpx01212
Fatty acid metabolism
rpx02024
Quorum sensing
Module
rpx_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
rpx00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Rpdx1_3166
00071 Fatty acid degradation
Rpdx1_3166
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Rpdx1_3166
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
rpx01004
]
Rpdx1_3166
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rpx04147
]
Rpdx1_3166
Enzymes [BR:
rpx01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Rpdx1_3166
Lipid biosynthesis proteins [BR:
rpx01004
]
Acyl-CoA synthetase
Long/very long chain acyl-CoA synthetase
Rpdx1_3166
Exosome [BR:
rpx04147
]
Exosomal proteins
Exosomal proteins of breast milk
Rpdx1_3166
Exosomal proteins of breast cancer cells
Rpdx1_3166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
ADU44745
UniProt:
E6VNL7
LinkDB
All DBs
Position
complement(3376478..3378016)
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AA seq
512 aa
AA seq
DB search
MSFGWKNLGDLVDRSRDLDRPAIIDLRTTEPRIWSHIEIDRLANGVASYLTGLGFPRGTT
VAILSSNRAEYLAVYFGIMRAGFVALPVNTKQPPETIEFVLRDSDSKFAFVDAASRRLVP
DGFAVLDFDDDGPNGFAATIEPGDFETIEARPGELAQILYTSGSTGRPKGVELSHDSQLW
ALSTKVGDADGSNEVYIIAQPLFHMNGLFGAKCIFASNASVVLMPGFDGRRYLQALADYR
VTAVTAVPTMFARLLREPDLLAANDYSRLKRLALASAPITRAMADKIQAAFPHAALTHGY
GTTEAGPAVFGAHPDGKPLPPMTIGYPVDPAMVKLVDGPDDNEGVLLMRNPALMTRYRGM
PEKTASVMRDGWYYSGDVMRRDQDGFYYFIGRADDMFVCGGENIYPGDVEKMLETHPAVR
QAAVVPLADEERGQMPVAFLVLTDGQHATTEEIKAYALRNGPTYQHPRRVSFVADLPWAG
TNKIDRAALIREAKELEARGGWSVSSGAEVAA
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcggatggaagaatctcggagatctggtggatcgctcccgcgatctggatcgt
ccggcgatcatcgatctgcggacgacggagccgcggatatggagccacatcgagatcgac
agactggccaacggggtggcgtcgtatctcaccgggctcggttttccgcgcgggacgacg
gtggcgatcctgtcgtcgaaccgcgccgagtacctagcggtgtatttcgggatcatgcga
gccggcttcgtcgcgctgccggtcaacaccaaacagccaccggagacgatcgaattcgtg
ctgcgtgattccgattcgaagttcgcattcgtcgatgcggcgtcgcggcggctggttccg
gacggcttcgcggtgctggacttcgacgacgacggtccgaacggattcgccgcgaccatc
gagccgggcgacttcgaaacgatcgaagcgcggcccggcgagcttgcgcagattctctac
acctccggctcgactggacggccgaagggcgttgaactcagtcacgacagccagctctgg
gcgttgagcacgaaggtcggtgatgccgacggctcgaacgaggtctacatcatcgcgcag
ccgctgtttcacatgaacggcctgttcggcgcgaagtgcatcttcgccagcaatgcgtcc
gtcgtgttgatgccgggcttcgacggccggcgctatctgcaggcgctcgccgactaccgc
gtcaccgccgtcaccgctgttccgaccatgttcgcgcggctgctgcgggagccggatctg
ctcgccgccaacgactacagccggttgaagcgcttggcgctggcttcggcgccgattacc
agggcgatggccgacaagattcaggccgcgttcccgcacgccgcgctcacccacggttac
ggcaccacggaggccggcccggcggttttcggcgcgcacccggacggcaagccgctgccg
ccgatgacgatcggctatccggtcgatccggcgatggtgaagttggtcgacggcccggac
gacaacgagggcgttctgctgatgcgaaatccggctctgatgacgcgctaccgcggtatg
ccggagaagacggcctcggtgatgcgggacggctggtactacagcggcgacgtgatgcgc
cgcgaccaggatgggttttactatttcatcggccgcgccgacgacatgttcgtctgcggc
ggcgagaacatttatcccggcgacgtcgagaagatgctcgagacgcaccccgcggtgcgc
caggcggcggtcgttccgctcgccgacgaggagcgggggcaaatgccggtcgcattcctg
gtcctgaccgatggccagcatgcaaccaccgaggagatcaaggcctacgcgctgcggaat
ggtccgacctatcagcatccccgccgtgtcagcttcgtcgccgacctgccgtgggccggc
accaacaagatcgaccgcgcggccctgatccgcgaggcgaaggagctcgaagccaggggc
gggtggtcggtgtcgtcgggcgccgaggtggccgcatga
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