Rhodopseudomonas palustris DX-1: Rpdx1_3730
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Entry
Rpdx1_3730 CDS
T01381
Name
(GenBank) phage SPO1 DNA polymerase-related protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
rpx
Rhodopseudomonas palustris DX-1
Pathway
rpx03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rpx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Rpdx1_3730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpx03400
]
Rpdx1_3730
Enzymes [BR:
rpx01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
Rpdx1_3730
DNA repair and recombination proteins [BR:
rpx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Rpdx1_3730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
STI1-HOP_DP
Motif
Other DBs
NCBI-ProteinID:
ADU45295
UniProt:
E6VFU4
LinkDB
All DBs
Position
3996032..3997585
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AA seq
517 aa
AA seq
DB search
MRAVPCCKRDLCITNKLANQRHMHRIRLDSDTDFDGWRKAARELVLADVAPADITWSVTG
DEPELFDAAGLSPDAGAFAETAAPFTHFTQSPSPAQTFNVPARFVELAQLAILHRDPQRF
AYLYQLLWRLRANPELMQVATDPDVARLSAMAKAVRRDEHKMHAFVRFREIGREPKSRYV
AWFEPEHHIVELAAPFFARRFADMEWSILTPDVCAHWDGHRVAITPGVTKAMAPSEDRLE
QTWLTYYASIFNPARLKTKAMQAEMPKKYWRNLPEAALIKPLIEHAERKAHAMVAAEATA
PRKPQRQEQPMTRAKPKADTLAHLREEAKDCRACDLWKDATQTVFGEGPQHATVMLVGEQ
PGDKEDLAGKPFVGPAGQMLDRALAEAGVDRSKTYVTNAVKHFKFVPRGKIRLHQKPNTP
EIKACRQWYERELAAVQPLLVVAMGATAAQSVLGKVTPINANRGHLIDRDDGPQVLVTVH
PSYLLRLPDAEAKEREYARFVDDLKIVAAHLRKADVA
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgagggctgtgccatgttgcaagcgcgacctgtgcataactaacaagttggctaaccaa
aggcacatgcaccgcatccggctcgacagcgacaccgatttcgacggctggcgcaaggcg
gcgcgggagctggtgctggcggacgtggcaccggcggatatcacctggagcgtgacgggc
gacgagccggagctgttcgacgcggcggggctgtcgccggatgcgggagcctttgctgaa
acggccgcgccgttcacacactttacccaatcgccctcccccgcgcagaccttcaacgtc
cccgcccgcttcgtcgagctggcgcaactcgccatcctgcaccgcgatccgcagcgcttc
gcatatctgtatcagttgctgtggcgtctccgcgccaatcccgagctgatgcaggtggcg
accgatcccgacgtggcgcggctttcggcgatggccaaggcggtgcggcgcgacgagcac
aagatgcacgccttcgtccggttccgcgagatcggccgcgagccgaagtcgcgctacgtc
gcctggttcgaacccgagcatcatatcgtcgagctggccgcgccgttcttcgcccgccgc
ttcgccgatatggaatggtcgatcctgacgcccgacgtctgcgcgcattgggacggccac
agggttgcgatcacgcccggcgtcaccaaggcgatggcgccgtcggaggatcgcctcgaa
caaacctggctcacctactacgccagcatcttcaatccggcgcggctgaagaccaaggcg
atgcaggccgagatgccgaagaaatattggcgcaatctgcccgaagcggcgctgatcaaa
ccgctgatcgaacacgccgagcgcaaggcgcacgcgatggtcgcggccgaggcgaccgcg
ccgaggaagccgcagcgacaggagcaaccgatgacgagagccaagcccaaggccgacacg
ctggcgcatctgcgcgaggaagcgaaagattgccgcgcctgcgacctgtggaaggacgcc
acccagaccgtgttcggcgaaggtccgcagcatgccaccgtgatgctggtcggcgaacag
cccggcgacaaggaagacctcgccggcaagccgttcgtcggcccggccgggcagatgctc
gatcgggcgctggcggaagccggcgtcgaccgcagcaagacctatgtgaccaacgcagtg
aagcacttcaaattcgtgccgcgcggcaagatccgcctgcaccagaagccgaacacgccg
gagatcaaggcgtgccggcaatggtacgagcgcgaactcgccgcggtgcagccgctgctg
gtcgtcgccatgggcgccaccgcggcgcagagcgtgctcggcaaggtgacgccaatcaac
gccaatcgcggccatctgatcgaccgcgacgacggcccgcaggtgctggtgacggtgcat
ccatcgtatctgctgcgcctgcctgacgccgaggccaaagagcgcgaatacgcccgcttc
gtcgacgacctgaaaatcgtcgccgcgcatctgaggaaggcggatgtggcgtag
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