Rhodopseudomonas palustris DX-1: Rpdx1_3765
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Entry
Rpdx1_3765 CDS
T01381
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
rpx
Rhodopseudomonas palustris DX-1
Pathway
rpx00061
Fatty acid biosynthesis
rpx00071
Fatty acid degradation
rpx01100
Metabolic pathways
rpx01212
Fatty acid metabolism
rpx02024
Quorum sensing
rpx04146
Peroxisome
Module
rpx_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
rpx00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Rpdx1_3765
00071 Fatty acid degradation
Rpdx1_3765
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Rpdx1_3765
09145 Cellular community - prokaryotes
02024 Quorum sensing
Rpdx1_3765
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
rpx01004
]
Rpdx1_3765
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rpx04147
]
Rpdx1_3765
Enzymes [BR:
rpx01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Rpdx1_3765
Lipid biosynthesis proteins [BR:
rpx01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Rpdx1_3765
Exosome [BR:
rpx04147
]
Exosomal proteins
Exosomal proteins of breast milk
Rpdx1_3765
Exosomal proteins of breast cancer cells
Rpdx1_3765
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_2
Beta-prop_EIPR1
Motif
Other DBs
NCBI-ProteinID:
ADU45330
UniProt:
E6VGT3
LinkDB
All DBs
Position
complement(4039453..4040997)
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AA seq
514 aa
AA seq
DB search
MSENQLYHGIVSGDRRRSFDEVNARVATIAGGLQALGVKPGDCVCVLMRNDIAFMEAVYG
VMTLGAYAVPVNWHFKPEEVGYIIADSATRVLIGHADLLHAVASAIPADLPVLSVPTPPE
VIANYKIAPDHLSPPTGAIGLDGWMAQQKPYDGPALPQPQNMIYTSGTTGHPKGVKRFAP
TPEQAAHAEKMRATIYGLKPQARALCPGPLYHSAPNSFGIRAGKLGGVLVLMPRFHPEEF
LALVQEHKIDTVFMVPTMFIRLMKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWW
GPVIYEFYGSTESGAVTFATSEDALDKPGTVGKIAHGAELKFIDDDGNEVPQGQIGEIFS
RIAGNPDFTYHNKPEKRAEIDRDGFITSGDMGYLDDDGYVFICDRKRDMVISGGVNIYPA
EIEAALHAVPGVHDCAVFGIPDAEFGEALMAMLEPQPGVTVDENFVRSRLKLALADYKVP
KHIKIMPELPREDSGKIFKRRLRDPYWANAGRVI
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagaaccagctttatcacggcatcgtttccggcgaccgccgccgcagcttcgac
gaagtgaacgcccgcgtcgcgaccatcgccggcggactgcaggcgctcggcgtcaaaccc
ggcgattgcgtctgcgtgctgatgcgcaacgatatcgcattcatggaggcggtgtacggc
gtgatgacgctcggcgcctatgcggtgccggtaaactggcatttcaagcccgaagaagtc
ggctacatcatcgccgattccgcaacccgggtgctgatcggccacgccgatctgttgcac
gccgtcgcctcggcgatcccggcggaccttccggtgctcagcgtgccgacgccaccggaa
gtgatcgccaactacaagatcgcgccggatcatctgtcgccgccgaccggcgcgatcggt
ctcgacggctggatggcgcagcagaagccgtatgacggcccggcgttgccgcagccgcag
aacatgatctacacctccggcaccaccgggcacccgaaaggcgtcaagcggttcgcgccg
acgccggagcaggcggcgcatgccgagaagatgcgcgcgacgatctacggtctgaagccg
caagcccgggcgctgtgcccgggcccgctgtatcactcggcgccgaactcgttcggcatc
cgtgccggcaagctcggcggcgtgctggtgctgatgccgcgcttccaccccgaagagttc
ctggcgctggtgcaggagcacaagatcgacacggtgttcatggtgccgacgatgttcatc
cggctgatgaagctgcccgaggaggtgcgcgccaaatacgacgtctcgtcgctgcgccac
gtcatccacgccgccgcgccgtgcccggccgacgtcaagcgtgcgatgatcgaatggtgg
gggccggtgatctacgagttctacggctcgaccgaaagcggcgctgtaacgttcgcaacc
tccgaagacgcgctggacaagcccggcaccgtcggcaagatcgcgcacggcgccgagctg
aagttcatcgacgacgacggcaacgaagtgccgcaggggcagatcggcgaaatcttttcg
cggatcgccggcaatccggacttcacctatcacaacaagccggagaagcgcgcggagatc
gaccgcgacggattcatcacctccggcgatatgggctatctcgacgatgacggctacgtg
ttcatctgcgatcgcaagcgcgacatggtgatctccggcggcgtcaacatttatcccgcc
gagatcgaggcggcgctgcacgcggttccgggcgtgcacgattgcgcggtgttcggcatt
ccggatgcggaattcggcgaggcgctgatggcgatgcttgagccgcagcccggcgtgacg
gtggacgagaatttcgttcgctcgcggctcaagctggcactcgccgactacaaggtgccc
aagcacatcaagatcatgccggagctgccgcgcgaggattccggcaagatcttcaagcga
cgcctgcgcgatccgtattgggcgaatgccggccgggtgatctaa
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