Rhodopseudomonas palustris DX-1: Rpdx1_4161
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Entry
Rpdx1_4161 CDS
T01381
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD subfamily
KO
K03086
RNA polymerase primary sigma factor
Organism
rpx
Rhodopseudomonas palustris DX-1
Pathway
rpx02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rpx00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Rpdx1_4161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpx03021
]
Rpdx1_4161
Transcription machinery [BR:
rpx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Rpdx1_4161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
ADU45715
UniProt:
E6VLB1
LinkDB
All DBs
Position
complement(4477333..4479429)
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AA seq
698 aa
AA seq
DB search
MASKAKTVQVQDKDKDDKVDAPEKDSVDAPSPLLDLSDAAVKKMIKQAKKRGFVTFDQLN
EVLPSDTTSPEQIEDIMSMLSDMGINVSEAEDTEAEEEEAKEEADEELDNDLVEVTAKAV
TETKKSEPGERTDDPVRMYLREMGTVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQ
AIIIWRDELNEGKIFLRDIIDLEATYAGPEGKNNIGDSGEEAAAEGEGGAPAHVAPPAAP
PSATPFRPAQQRGAAPAEGEGEGAPEGDGDDDEFENQMSLAAIEAELKPKVVETFDKIAD
NYKKLRKLQEQDIANQLQNEQLSPSQERKYKKLKDEIIVEVKSLRLNQARIDSLVEQLYD
INKKLVSFESRLMRLADSHGVARDDFLRNYQGSELDPRWLNRVSKLSAKGWKNFVHHEKD
RIKDLRQEVQSMAALTGLEIGEFRKIVHSVQKGEREARQAKKEMVEANLRLVISIAKKYT
NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH
MIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPLSLETPVGDEE
DSHLGDFIEDKNAVLPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEE
VGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggccagcaaggcaaagacggttcaggtgcaggacaaggacaaggacgacaaggtggac
gcgccggagaaggactccgtcgacgctccctcgccgctcctcgacctgtcggacgcggcc
gtcaagaagatgatcaagcaggccaagaagcgcggcttcgtcaccttcgatcagctcaat
gaagtgctgccctccgacaccacgtcgccggagcagatcgaagacatcatgtcgatgctg
tccgacatgggcatcaatgtgtccgaggcggaagacaccgaggccgaagaggaagaggcc
aaggaagaggccgacgaggagctcgataacgatctggtcgaagtcaccgccaaggccgtc
accgagaccaagaagtccgagcccggcgagcgcaccgacgatccggtccggatgtacttg
cgcgagatgggcaccgtcgagctgctgtcgcgcgagggcgaaatcgcgatcgcgaaaagg
atcgaagccggccgggaggcgatgatcgcgggcctgtgcgaaagcccgctgaccttccag
gcgatcatcatctggcgcgacgaactcaacgaaggcaagatcttccttcgtgacatcatc
gatcttgaagcgacttacgccggccccgaaggcaagaacaacatcggcgattccggtgag
gaagccgcggccgaaggcgagggcggtgcgcccgcgcacgtcgcgccgccggcggctccg
ccgtccgcgaccccgttccgtcccgcgcagcagcgcggcgccgcgccggccgaaggcgag
ggcgaaggcgcgcccgagggcgacggcgacgacgacgagttcgagaaccagatgtcgctc
gccgcgatcgaggccgagctcaagccgaaggtggtcgagaccttcgacaagatcgccgac
aactacaagaagctgcgcaagctgcaggagcaggacatcgccaaccagctgcagaacgag
cagctgtcgccgtcgcaggagcgcaagtacaagaagctgaaggacgagatcatcgtcgag
gtgaagtcgctgcgcctcaaccaggcccgtatcgacagcctggtcgagcagctctacgac
atcaacaagaagctggtgtcgttcgagagccgcctgatgcgtctcgccgacagccacggc
gtcgcccgcgacgacttcctgcgcaactatcagggctcggagctcgatccgcgctggctc
aaccgggtgtcgaagctctcggccaagggctggaagaacttcgtccaccacgagaaggac
cggatcaaggatctgcgccaggaagtgcagtcgatggcggcgctcaccgggctcgagatc
ggcgaattccgcaagatcgtccactcggtgcagaagggcgagcgcgaagcccgtcaggcc
aagaaggaaatggtcgaggccaatctccgcctcgtgatctcgatcgccaagaagtacacc
aaccgcggcctgcagttcctcgatctcattcaggaaggcaacatcggcctgatgaaggcg
gtcgacaagttcgagtatcgccgcggctacaagttctcgacctacgccacctggtggatc
cggcaggcgatcacccgcagcattgcggaccaagcccgcaccatccgcatcccggtgcac
atgatcgagacgatcaacaagatcgtccgcacctcgcggcagatgctcaacgagatcggc
cgcgagccgaccccggaagagcttgccgaaaagctcggcatgccgctggagaaggtccgc
aaggtcctgaagatcgccaaggagccgctgtcgctcgaaaccccggtgggtgacgaagag
gacagccatctcggcgacttcatcgaggacaagaacgccgtgctgccgatcgacgccgcg
atccagtcgaacctgcgcgagaccaccacgcgcgtgctggcctcgctgaccccgcgcgaa
gagcgcgtgctgcgcatgcgcttcggcatcggcatgaacaccgaccacacgctggaagaa
gtcggccagcagttctcggtgacccgggagcgtatccgccagatcgaagcgaaagcgctg
cgcaagctgaagcacccgtcgcggtcaaggaagctgcggtcgttcctcgataactaa
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