Rhodopseudomonas palustris DX-1: Rpdx1_4400
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Entry
Rpdx1_4400 CDS
T01381
Name
(GenBank) ErfK/YbiS/YcfS/YnhG family protein
KO
K21470
L,D-transpeptidase YcbB
Organism
rpx
Rhodopseudomonas palustris DX-1
Brite
KEGG Orthology (KO) [BR:
rpx00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rpx01002
]
Rpdx1_4400
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rpx01011
]
Rpdx1_4400
Peptidases and inhibitors [BR:
rpx01002
]
Cysteine peptidases
Family C82
Rpdx1_4400
Peptidoglycan biosynthesis and degradation proteins [BR:
rpx01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
Rpdx1_4400
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Scaffold
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
ADU45951
UniProt:
E6VNV5
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All DBs
Position
4734564..4736795
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AA seq
743 aa
AA seq
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MRDHSTGRRGFEGVLMAVAATFLTVSTTSVLAQSPARSPADLAIDAAVPVPNPVDLPPPT
IGDFKPDSTPAAASAPRAGENQTSATVPSSTEPSKDVATKSTEAKDTETKNTETKNTETK
DAATAAAGEPKVEAPAATANAPVAEPAKPAADQASTVKPAEPQQQPASTVAAADQPVADQ
LRDLLAKSASRYFERKVERSAVEKFYEARDYAPVWTKAGVLTAPAKGVIARLKDAAADGL
DPDDYPVPNFASATSPEMLAEAELRLTESMMDYARQAQSGRMHWSQVSADIQYPEHPIDP
AQVLATVTTAADASAALDSYNPPHKLYRELKKKLAELRGESDKPAIKIAEGETLRYQPAG
KKRAEVKIDDPRVPQLRARLGVTENTDSATYDAAVAAAVRKFQHSADLKATGVLDDRTVK
ALNTPKRDRTIDTILVNMERWRWLPRQLGAPALDDAYVILNVPDYTLKLMQNGEQVWSTR
VVVGKPGKHATPLLTETMKYITVNPTWNVPPSIINNEYLPALQQDPTVLDRMGLKLSRNR
DGSIHISQPPGEANALGRIRFNFPNKFLVYQHDTPDKNLFGRDERAFSHGCMRVQNPDQY
AAALLNIAMPDKNYTPARIRSMYGRSEVDLKFATPIPVNITYQTAFVDDDGKLQLRKDIY
GRDAAMLALLKNGKGKNLEAVVAHAQPSYARPTRLPNGVSIAGDYTGSAGPSSNPFSFLE
NLFGGPQPRQQPSAAQQRRVYAR
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgcgagatcactcgactggacgccgcggtttcgaaggcgtgctgatggccgtcgcggcg
accttcctcaccgtatcgacgacctccgttctggcgcagtcgccggcgcggtcgcctgcg
gatctcgcaatcgatgccgccgttcccgtccctaatccggtcgatctgccgccgcccacg
atcggtgatttcaagcccgattccacgcctgcggccgcttccgcgccccgagctggcgag
aaccagacgagcgcaaccgtgccctcctccaccgagccgtccaaggacgtagcgacgaag
agcactgaagcgaaggacaccgaaacgaagaacactgaaacgaagaacactgaaacgaag
gacgctgcgacggccgccgccggcgaaccgaaggtcgaggctcctgccgcaaccgccaac
gcgcccgtggctgagcccgccaagcccgccgccgatcaggcttcgaccgtcaaaccggcc
gaaccgcagcagcagccggcaagcacggtcgctgccgccgatcagccggtggccgatcag
cttcgcgatctgctcgccaagagcgcgtcgcgctatttcgaacgcaaggtcgaacgcagc
gcggtggagaagttctacgaggcgcgcgactacgcgccggtgtggaccaaggcgggtgtg
ctcactgcgccggccaagggtgtgatcgcccggctgaaggacgctgccgcagacggtctc
gatcccgacgactatccggtgccgaacttcgcgtccgcaacctcgcccgagatgctcgcg
gaagccgaactgcgtctcaccgagagcatgatggattatgcgcgtcaggcgcagagcggc
cggatgcactggtcgcaggtgtcggccgacatccagtatccggagcacccgatcgatccg
gcgcaggtactcgctacggtcacgaccgccgccgacgcctcggcggccctggacagctat
aatccgccgcacaagctgtatcgcgagctgaagaagaagctcgccgagctgcgcggtgaa
agcgacaagccggcgatcaagatcgccgagggcgagacgctgcgttatcagccggccggc
aagaagcgcgccgaggtgaagatcgacgatccgcgggtgccgcagctccgcgcccgcctc
ggcgtcaccgagaacaccgacagcgccacctacgacgccgccgtcgccgccgccgtgcgc
aaattccagcactcggccgatctcaaggcgacgggcgtactcgacgaccgcaccgtcaag
gcgctgaacacgccgaagcgtgatcgcaccatcgacaccatcctggtcaacatggaacgc
tggcgctggctgccgcgccaactcggcgcgccggcgctggacgacgcctatgtgatcctc
aatgtccccgactacacgctgaagctgatgcagaacggcgagcaagtctggtcgacccgc
gtggtcgtcggcaagcccggcaagcatgccaccccgctgctgacggagacgatgaaatac
atcaccgtcaatccgacctggaacgtgccgccgtcgatcatcaacaacgagtatctgccg
gcgctgcagcaggatccgaccgtgctcgaccgcatgggcctgaagctgtcgcgcaaccgc
gacggctcgatccacatctcgcagcctccgggtgaagccaacgcgctcggccgcatccgc
ttcaacttcccgaacaaattcctggtgtatcagcacgacacgccggacaagaatctgttc
ggccgcgacgagcgtgccttcagccacggttgcatgcgggtgcagaacccggatcagtac
gcggcggcgctactgaacatcgcgatgccggacaagaactacaccccggcgaggattcgg
tcgatgtacggccgcagcgaagtcgacctgaaattcgcaacgccgatcccggtcaacatc
acgtatcagacggcattcgtcgacgacgacggcaaactgcagttgcgcaaggatatctac
ggccgtgacgccgccatgctggcgctgctgaagaacggcaagggcaagaacctcgaggcc
gtggtggcgcacgcccagccgagctacgcccgcccgacccgactgcccaacggcgtcagc
atcgccggtgactacaccggctccgccggcccctcgtcgaacccgttctcgttcctcgag
aatctgttcgggggcccgcagccgcgacagcagccgtccgctgctcagcagcgccgggtc
tacgcccgctga
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