Rhodopseudomonas palustris DX-1: Rpdx1_4486
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Entry
Rpdx1_4486 CDS
T01381
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
rpx
Rhodopseudomonas palustris DX-1
Pathway
rpx00061
Fatty acid biosynthesis
rpx00071
Fatty acid degradation
rpx01100
Metabolic pathways
rpx01212
Fatty acid metabolism
rpx02024
Quorum sensing
rpx04146
Peroxisome
Module
rpx_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
rpx00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Rpdx1_4486
00071 Fatty acid degradation
Rpdx1_4486
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Rpdx1_4486
09145 Cellular community - prokaryotes
02024 Quorum sensing
Rpdx1_4486
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
rpx01004
]
Rpdx1_4486
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rpx04147
]
Rpdx1_4486
Enzymes [BR:
rpx01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Rpdx1_4486
Lipid biosynthesis proteins [BR:
rpx01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Rpdx1_4486
Exosome [BR:
rpx04147
]
Exosomal proteins
Exosomal proteins of breast milk
Rpdx1_4486
Exosomal proteins of breast cancer cells
Rpdx1_4486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
OxoDH_E1alpha_N
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
ADU46037
UniProt:
E6VPQ8
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All DBs
Position
4823912..4825603
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AA seq
563 aa
AA seq
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MERIWLKHYPAGIPADIDVTQYPSLVDLFEESFRKFGDRKAFICMDKAISYRELDEMSAA
LGAYLQGKGLQKGARVALMMPNVLQYPVAIAAVLRAGFAVVNVNPLYTPRELEHQLKDSG
AEAIIVLENFAHTVEQVIARTPVKHVIVGAMGDMLGFKGVIVNLVVRKIKKMVPAFSLPG
SVSFNDAVSAGRGARLTKPVIGPDDVAFLQYTGGTTGVSKGATLLHRNVVANVLQNDAWL
QPALDKPPHIDQLFIVCALPLYHIFALTACYLLGLRAGGVNLLIPNPRDIPGFIKELMKY
QVNTFPAVNTLYNGLLHAPGFDKVDFSKLKISNGGGMAVQRPVAEAWLKLTGCPIAEGYG
LSETAPVLTCNPATVTEFNGTIGIPVPSTYISIRDDEGNEVPLGTAGEICAKGPQVMAGY
WNRPDETALVMTADGYFRTGDVGIMNQDGFTKIVDRKKDMILVSGFNVYPNEVEEVIASH
PGVLECAVIGVPDSRTGEAVKAFVVKKDPDVTAEDIIKFCHNELTNYKVPRQIEFRTTLP
KTNVGKILRRELRDEKKSSQAAA
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atggagcggatttggctcaagcactacccggcgggcatcccggcggacatcgacgtgacg
cagtatccctcgttggtcgatctgttcgaggagagcttccgtaagttcggagaccgcaaa
gccttcatctgcatggacaaggcgatcagctatcgcgagctcgatgaaatgtcggccgcg
ctcggcgcctatctccagggcaagggcctgcagaagggcgcgcgcgtcgcgctgatgatg
ccgaacgtcctgcaatatcccgtggccatcgccgcggtgctgcgcgccggcttcgccgtg
gtcaacgtcaacccgctgtacaccccgcgcgagctcgaacaccagctcaaggactccggc
gccgaagccatcatcgtgctggagaatttcgcccacaccgtcgagcaggtgatcgcgcgc
accccggtcaaacacgtcatcgtcggcgcgatgggcgacatgctcggcttcaagggcgtg
atcgtcaatctggtggtccgcaagatcaagaagatggtgccggcgttttcgctgccgggc
tcggtgtcgttcaacgacgccgtttccgccggccgcggcgccaggctcaccaagccggtg
atcggtccggacgatgtcgccttcctgcaatacaccggcggcaccaccggcgtctccaag
ggcgcgaccctgcttcaccgcaacgtcgtcgccaacgtgctgcagaacgacgcctggctg
cagccggcgctcgacaagccgccgcacatcgaccagcttttcatcgtctgcgcgctgccg
ctgtaccatatcttcgcgctgaccgcgtgctacctgctcggactgcgcgccggcggcgtc
aacctgctgattcccaacccgcgcgacatccccggcttcatcaaggaactgatgaagtat
caggtcaacaccttcccggccgtcaacacgctgtataatggcctgttgcatgcacccggc
ttcgacaaggtcgacttttccaagctgaagatctccaacggcggcggcatggcggtgcaa
cgaccggtggccgaagcctggctgaagctgaccggctgcccgatcgccgaaggctacggc
ctgtcggagaccgcgccggtgctgacctgcaacccggcgaccgtcaccgaattcaacggc
acgatcggcattccggtgccttcgacctacatctcgatccgcgacgacgaaggcaacgaa
gtcccgctcggcaccgccggcgagatctgcgccaagggcccgcaagtgatggccggctat
tggaaccggcccgacgagaccgcgctggtgatgaccgccgacggctatttccgcaccggc
gacgtcggcatcatgaaccaggacggcttcaccaagatcgtcgaccgcaagaaggatatg
atcctggtctccggcttcaacgtctatcccaacgaggtcgaggaagtgatcgccagccat
cccggcgtgctggaatgcgcggtcatcggcgtcccggactcgcgcaccggcgaggccgtc
aaggcgttcgtggtgaagaaggacccggatgtgaccgccgaggacatcatcaagttctgc
cacaacgagctgaccaactacaaagtgccgcggcagatcgaattccgcaccacgctgccg
aagaccaatgtcggcaagatcctgcgccgcgagctgcgcgacgagaagaagagcagccaa
gcggcggcttaa
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