KEGG   Rhodopseudomonas palustris DX-1: Rpdx1_4899
Entry
Rpdx1_4899        CDS       T01381                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
rpx  Rhodopseudomonas palustris DX-1
Pathway
rpx03030  DNA replication
rpx03410  Base excision repair
rpx03420  Nucleotide excision repair
rpx03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rpx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Rpdx1_4899
   03410 Base excision repair
    Rpdx1_4899
   03420 Nucleotide excision repair
    Rpdx1_4899
   03440 Homologous recombination
    Rpdx1_4899
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rpx03032]
    Rpdx1_4899
   03400 DNA repair and recombination proteins [BR:rpx03400]
    Rpdx1_4899
Enzymes [BR:rpx01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Rpdx1_4899
DNA replication proteins [BR:rpx03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Rpdx1_4899
DNA repair and recombination proteins [BR:rpx03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     Rpdx1_4899
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Rpdx1_4899
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N 5_3_exonuc DNA_pol_A_exo1 DNA_polI_exo1 HHH_5
Other DBs
NCBI-ProteinID: ADU46440
UniProt: E6VFY1
LinkDB
Position
5268584..5271667
AA seq 1027 aa
MPKTTKSAAAAPAASSATPPAPAGVKPPGKGDHVFLVDGSSYIFRAYHALPPLNRKSDGL
QVNAVLGFCNMLWKLLRDMPPENRPTHLAIIFDKSEVTFRNALYPEYKAHRPPAPEDLIP
QFGLIREAVRAFDLPCLEQSGFEADDLIATYVREACEAGATATIVSSDKDLMQLVTDCVV
MYDTMKDRRIGVPEVIEKFGVPPNKVVEVQALAGDSVDNVPGVPGIGIKTAAQLINEYGD
LETLLARAPEIKQPKRREALIENAEKARISRKLVLLDDHVKLEVPLAELAVHEPDARKLV
AFLKAMEFTTLTRRVAEYAQIDPSDVEAETALKSAVPPLARSGSTSASGDLFAGQEPSPQ
PSPASGRGGAPDSGPGGPLNAGRGRDGKPGVVLSPEALVAARAEAARKVPVDRTAYKTLR
TLDELHAVIARIHDSGVVALEAVATSIDPMQAELTGVALALGPNDACYIPLGHKQAGDGD
GLFAAGLAPDQLGTRDALDALKPVLESAGIAKVGFAIKFAAVLLAQHGLTLRNIDDPQLM
SYALDAGRGSHGLDALSESNLGHTLHTLTELTGTGKNKIGLDQVGIDRATAYAAERADVS
LRLARVLKPRLVAGSMTAVYETLERPLVGVLARMERRGISIDRQVLSRLSSDFAQTAARI
EAEIRELAGEDINIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPK
KILEWRQVSKLRSTYTDALPNYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTED
GRKIRRAFVATPGHKLVSADYSQIELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVP
VEGMPSEIRRRAKAINFGIIYGISAFGLANQLGIPREEAGAYIKRYFERFPGIRAYMDET
RDFCRAHGYVTTLFGRKCHYPDIKASNPSIRAFNERAAINARLQGSAADIIRRAMVRMED
ALAEKKLSAQMLLQVHDELIFEVPEAEVEATLPVVRSVMQDAPFPAVILNVPLQVDARAA
DNWDEAH
NT seq 3084 nt   +upstreamnt  +downstreamnt
atgccgaaaacgaccaagtccgccgctgcggcgcctgccgcttcctccgccacgccccct
gccccggccggcgtcaagccgcccggcaagggcgaccatgtgttcctggtcgacggctcg
tcttacattttccgcgcctatcacgcgctaccgccgctgaaccgcaaatccgacgggctg
caggtcaatgccgtgctcggcttctgcaacatgctgtggaagctgctccgcgacatgccg
ccggagaaccggccgacccatttggccatcatcttcgacaagtcggaagtcaccttccgc
aacgcgctctaccccgaatacaaggcgcatcggccgccggcgccggaggatctgatcccg
caattcggcctgatccgcgaggcggtgcgggcgttcgatctgccgtgcctggaacagtcc
ggtttcgaggccgacgatctgatcgccacttacgtgcgagaggcctgcgaggccggggcc
acggcgacgatcgtgtcgtccgacaaggacctgatgcagctcgtgaccgactgcgtggtg
atgtacgacaccatgaaggaccgccgcatcggcgtgcccgaggtgatcgagaaattcggc
gtgccgcccaataaggtcgtcgaggtccaggcgctggccggcgacagcgtcgacaacgtg
ccgggggtgccgggcatcggcatcaagaccgcagcgcagctgatcaacgaatatggcgac
ctcgaaaccctgctcgcccgcgcacctgagatcaagcagccgaagcggcgcgaagcgctg
atcgagaatgccgagaaagcgcggatctcgcgcaagctggtgctgctcgacgaccatgtg
aagttagaggtgccgctggccgagctcgcggtgcacgagccggacgcgcgaaaactggtg
gcgttcctcaaggcgatggaattcaccacgctgacgcggcgcgtcgccgaatatgcccag
atcgacccgtcggacgtcgaggcggagacggcgctcaagtcggcggtgccgccgctggcg
aggagcgggagcacgtcggcgagcggagacctgtttgcggggcaagagccctcaccccag
ccctctcccgcaagcgggagagggggcgcgccggattcggggccaggtggtcctctgaat
gccggacgcggacgcgacggcaagccgggcgtcgtgctgtcgccggaggcgctggtggca
gcgcgggccgaggccgcccgcaaggtgccggtcgaccgcaccgcctacaagacgctgcgc
acgctggacgagctgcacgctgtcatcgcccgcatccacgacagcggcgtggtggcgctg
gaagcggtcgcgacctcgatcgatccgatgcaggcggagctgaccggcgttgcgctggcg
ctcggcccgaatgatgcctgctacatcccgctcggccacaagcaggccggcgatggcgac
ggcctgttcgctgccggcctcgcgcccgatcagctcggcacccgcgacgcgctcgatgcg
ctgaagccggtcctcgaatccgccggaatcgccaaggtcggcttcgcgatcaagtttgcc
gcagtgctgctggcgcagcatggcctgaccttgcgcaacatcgacgatccgcaactgatg
tcctacgcgctcgatgccggccgcggcagccatgggctcgacgcgctgtccgagagcaat
ctcggccatacgctgcacacgctgactgagctgaccggcaccggcaaaaacaagatcggc
ctcgatcaggtcggaatcgaccgcgccaccgcctatgcggccgagcgcgccgacgtgagc
ttgcggctggcgcgcgtgctgaagccgcgccttgtcgccggcagcatgaccgcggtgtac
gagacgctggaacggccgctggtcggcgtgctggcgcggatggagcggcgcggcatctcg
atcgaccggcaggtgctgtcgcggctgtcatccgatttcgcccagaccgcggcgcggatc
gaggccgagatccgcgagcttgcgggcgaggacatcaacatcggcagcccgaagcagctc
ggcgacatcctgttcggcaagatgggcctgccgggtggcagcaagaccaagaccggcgcg
tggtcgacttcggcacaggtgctcgacgaactcgccgagcagggccacgaattcccgaag
aagattctggagtggcggcaggtcagcaagctgcgctcgacctacaccgatgcgctgccg
aattacgtgcatccgcagacccaccgcgtccacacgacgtatgcgctcgccgccaccacg
acggggcggctgtcgtcgaacgagccgaacctgcagaacatcccggtgcggaccgaggac
gggcgaaaaatccgccgcgccttcgtggcgacgccgggacacaaactggtgtcggcggac
tactcgcagatcgaactgcgcctgctctccgaagtcgccgacgtcccggctttgcgaaaa
gcgtttcaggacggcatcgatattcacgcgatgaccgcgtcggagatgttcggcgtcccg
gtcgaaggcatgccgtcggaaatccgccgccgcgccaaagcgatcaatttcggcatcatc
tacggcatctcggcgttcggcctcgccaatcagctcggcatcccgcgcgaggaagccggc
gcctacatcaagcgctacttcgaacgcttcccgggcatccgcgcctatatggacgagacc
cgcgatttctgccgcgcgcatggttacgtcaccacgctgttcggccgcaaatgccactac
ccggacatcaaggcctcgaacccgtcgatccgcgccttcaacgaacgcgccgcgatcaat
gcccggctgcagggctccgccgccgacatcatccgccgcgccatggtgcggatggaggac
gcgctcgccgagaagaagctcagcgcccagatgctgctgcaggtccacgacgaactgatc
ttcgaagtgccggaagccgaggtcgaagcgacgctgccggtggtccgctcggtgatgcag
gacgcgccgttcccggcggtgatcctcaacgtcccgctgcaggtcgacgcccgcgccgcc
gacaattgggacgaggcgcactga

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