Rhodopseudomonas palustris DX-1: Rpdx1_5011
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Entry
Rpdx1_5011 CDS
T01381
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rpx
Rhodopseudomonas palustris DX-1
Pathway
rpx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rpdx1_5011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpx03019
]
Rpdx1_5011
03400 DNA repair and recombination proteins [BR:
rpx03400
]
Rpdx1_5011
Enzymes [BR:
rpx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rpdx1_5011
Messenger RNA biogenesis [BR:
rpx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rpdx1_5011
DNA repair and recombination proteins [BR:
rpx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Rpdx1_5011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
ResIII
HHH
SaeA_1st
Motif
Other DBs
NCBI-ProteinID:
ADU46551
UniProt:
E6VH49
LinkDB
All DBs
Position
5393507..5395360
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AA seq
617 aa
AA seq
DB search
MTRSAPRETDDDLDARMLSTLNHVFGLSSFRGQQEAIVRHVADGGDALVLMPTGGGKSLC
YQLPALLRDGCGVVVSPLIALMRDQVAGLLESGVRAAALNSTLSYDEASAIEQQLLKGEL
DLLYVAPERLLTPRCLGLLARAKIALFAIDEAHCVSQWGHDFRPEYVGLSAIAEKFPNVP
RIALTATADALTRREIAERLALTDAPCFVSSFDRPNIRYSIVDKQNAPAQLKAFIDDRHR
GHSGVVYCLSRAKVEDIAETLSKSGLTALPYHAGLPPDARARNQDRFLNEDGIVIVATIA
FGMGIDKPDVRFVAHLDLPKSIEAYYQETGRAGRDGKPSEAWMAYGLSDIVQQRRMIDES
SGSDAFKRVSMGKLDALVGLCESTGCRRTRLLGYFGETAQHESCGNCDNCLTPPKVIDGT
VPAQKLLSCAYRTGQRFGAQHLIDVLLGRLTERVGQFGHDRLSVFGIGGEFNEKQWRAVI
RQLVSLGHLAPDSEAFGALKLTETSRAVLKGEAQVMLREQTGGRPPRARSRRGEVGAAPR
ETSGDPELFAALKAWRSEVAKARGVPAYVVLHDATMDGIAAARPRTLDELRGIPGIGDKK
LEIYGAALLALMGGGQR
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgacccgctccgcgcctcgcgaaaccgacgacgacctcgacgccaggatgctgtcgacg
ctgaaccatgtgttcggcctgtcgtcgttccgcggccagcaggaggcgatcgtgcgccac
gtcgccgatggcggcgacgcgctggtgctgatgccgaccggcggcggcaagtcgctgtgc
tatcagttgccggcgctgctgcgcgacggctgcggcgtggtggtgtcgccgctgatcgcg
ctgatgcgcgatcaggtcgccggcctgctggaaagcggggtgcgcgccgccgcactgaac
tcgacgctgtcctacgacgaagcgagcgccatcgagcagcaattgctgaaaggcgaactc
gacctgctctatgtcgcccccgaacgactgttgacgccgcgctgcctcggcctgctggcg
cgggcgaagatcgcgctgttcgcgatcgacgaggcgcattgcgtgtcgcaatggggccac
gacttccggcccgaatatgtcggcctctcggcgatcgccgagaaatttccgaatgttccg
cggatcgcgctgaccgcgaccgccgatgcgttgacccgccgcgagatcgccgagcggctg
gcgctgaccgacgccccgtgcttcgtctccagcttcgaccggcccaacatccgctacagc
atcgtcgacaagcagaacgcgccggcccagctcaaggcgttcatcgacgatcggcatcgc
ggccattccggcgtggtgtattgcctgtcgcgcgccaaggtcgaggacattgccgagacg
ctgagcaagtccggcctcaccgcgctgccgtatcacgccggcctgccgccggacgcgcgc
gcgcgcaatcaggatcgcttcctcaacgaggacggcatcgtgatcgtggccacgatcgcg
ttcggcatgggtatagacaagccagacgtgcggttcgtcgcgcatctcgatctgcccaag
agcatcgaggcgtactaccaggagaccgggcgcgccggccgcgacggcaagccgtccgag
gcgtggatggcttacgggctcagcgacatcgtccagcagcgccggatgatcgacgagagc
agcggctccgacgcattcaaacgggtctcgatgggcaagctcgatgcgctggtcggcctg
tgcgaatccaccggctgccgccgtacccggctgctcggctatttcggcgagacggcgcag
cacgagagctgcggcaattgcgacaactgcctcaccccgccgaaggtgatcgacggcacc
gtgccggcacagaagctgttgtcctgcgcctatcgcacggggcagcggttcggcgcccag
cacctgatcgacgtgctgctcggccggctgaccgaacgggtcggccagttcggccacgac
aggctgtcggtgttcggcatcggcggcgaattcaatgagaagcaatggcgcgcggtgatc
cgccaactggtgtctctcggccacctcgcgccggacagcgaggcattcggcgcgctgaag
ctgaccgagacctcgcgtgcggtactgaagggcgaggcccaggtgatgctgcgcgaacag
accggcgggcgaccgccgcgggccagatcccgccgcggtgaggtcggtgcggcgccgcgc
gaaaccagcggcgatccggaactgttcgcggcgttgaaggcgtggcgctccgaagtggcg
aaggcccgcggcgtcccggcctatgtggtgctgcacgacgccaccatggatggcatcgcg
gcagcacggccgcgcacgctcgacgaactgcgcgggattccgggaatcggcgacaagaag
ctggagatttacggcgccgcgctgttggccctgatgggcggcgggcagcggtaa
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