Rhodococcus pyridinivorans SB3094: Y013_01350
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Entry
Y013_01350 CDS
T02974
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rpy
Rhodococcus pyridinivorans SB3094
Pathway
rpy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Y013_01350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpy03019
]
Y013_01350
03016 Transfer RNA biogenesis [BR:
rpy03016
]
Y013_01350
Enzymes [BR:
rpy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Y013_01350
Messenger RNA biogenesis [BR:
rpy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Y013_01350
Transfer RNA biogenesis [BR:
rpy03016
]
Prokaryotic type
tRNA degradation factors
Y013_01350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
KH-I_KHDC4-BBP
RNase_PH_C
KH_2
KH_KhpA-B
KH_NusA_1st
S1_RRP5
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
AHD19439
UniProt:
V9XBL4
LinkDB
All DBs
Position
285948..288233
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AA seq
761 aa
AA seq
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MTSTTAVEIDEGVYETTATLDNGAYGTRTIRFETGRLARQAAGSVVAYLDDETMLLSATS
ASKQPKDQFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVD
GLRNEIQVVVTVLSLNPNDLYDVVAINAASASTQLAGLPFSGPVGGVRVALIVSDDNKSG
QWVAFPTVEQLENAVFDMVVAGRIVGGGDNPDTADVAIMMVEAEATENVIALVDGGAQAP
TESVVAEGLEAAKPFIARLCIAQQQLAAASAKPTGEFPLFPPYQDDVYTAVESAASEKLA
EALTIAGKQERDDRTDEIKVEVLEQVAANFEGREKEIGAAFRSLTKKLVRQRILRDQFRI
DGRGVTDIRALSAEVAVVPRAHGSALFERGETQIMGVTTLDMVKMAQQVDSLGPETSKRY
MHHYNFPPYSTGETGRVGSPKRREIGHGALAERALIPVLPSQEEFPYAIRQVSEALGSNG
STSMGSVCASTLSMLNAGVPLKAPVAGIAMGLVSDEVELEDGTRETRYVALTDILGAEDA
FGDMDFKVAGTKDFVTALQLDTKLDGIPSQVLAGALSQAHDARATILEVMAEAIDTPDEM
SEFAPRITTIKVPVDKIGEVIGPKGKMINSITEETGANISIEDDGTVYVGAADGPSAQAA
IDKINAIANPQLPKVGERFLGTVVKTTAFGAFVSLLPGRDGLVHISKLGNGKRIAKVEDV
VNVGSKIRVEIADIDNRGKISLVPVEDESAEAAATGENAES
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgacaagcactaccgcagtcgagatcgacgaaggggtctacgagaccaccgcaacgctc
gacaacggtgcctacggcacccgcaccatccgtttcgagaccggccgcctcgcacgccag
gccgccggttcggtcgtcgcctatctcgacgacgagaccatgctgctctcggccaccagc
gcctcgaagcagcccaaggaccagttcgacttcttcccgttgacggtggacgtcgaggag
cgcatgtacgccgcgggtcgcatccccggctcgttcttccgtcgtgagggacgcccctcc
accgacgcgatcctgacctgccgtctgatcgaccggccgctgcgcccgtccttcgtcgac
ggtctgcgcaacgagatccaggtcgtcgtcacggttctgagcctgaacccgaacgacctc
tacgacgtcgtcgcgatcaacgccgcgtcggcctccacccagctcgccggcctgccgttc
tccggcccggtcggtggcgtgcgtgtcgcgctcatcgtctccgacgacaacaagtcgggc
cagtgggtcgcgttcccgaccgtcgagcagctcgagaacgccgtcttcgacatggtcgtc
gccggtcgcatcgtcggtgggggagacaaccccgacaccgcggacgtcgcgatcatgatg
gtcgaggccgaggcgaccgagaacgtcatcgcgctcgtcgacggtggcgcccaggcgccc
accgagtccgtcgtggccgagggcctcgaggcggcgaagccgttcatcgcccgcctgtgc
atcgcgcagcagcagctcgccgccgcctccgcgaagcccaccggtgagttcccgctgttc
ccgccctaccaggacgacgtctacaccgcggtcgagtccgccgcgtcggagaagctcgcc
gaggcgctcaccatcgccggcaagcaggagcgcgacgaccgcaccgacgagatcaaggtc
gaggtgctcgagcaggtcgctgcgaacttcgagggtcgcgagaaggagatcggcgctgcc
ttccgctcattgaccaagaagctcgtgcgccagcgcatcctgcgcgaccagttccgcatc
gacggccgcggtgtcaccgacatccgtgccctctccgccgaggtcgcggtcgttccccgc
gcccacggttcggcgctgttcgagcgcggcgagacccagatcatgggtgtcaccacgctc
gacatggtgaagatggcgcagcaggtcgactcgctcggtcccgagaccagcaagcgctac
atgcaccactacaacttcccgccgtactccaccggtgagaccggtcgcgtcggctcgccg
aagcgtcgcgagatcggccacggtgccctcgcagagcgcgcgctcatcccggttctgccg
agccaggaggagttcccctacgccatccgtcaggtctccgaggccctcggctcgaacggc
tcgacgtccatgggttcggtctgcgcctcgacgctgtcgatgctcaacgccggcgtgccg
ctcaaggccccggtcgccggtatcgccatgggcctggtctccgacgaggtcgagctcgag
gacggcacccgcgagacccgctacgtcgccctcaccgacatcctcggtgcggaggacgcg
ttcggcgacatggacttcaaggtcgccggcacgaaggacttcgtgaccgccctgcagctc
gacaccaaactcgacggtatcccgtcgcaggtcctcgccggtgcgctctcgcaggcccac
gatgcccgcgccacgatcctcgaggtcatggccgaggccatcgacacgcccgacgagatg
agcgaattcgctccgcgaatcaccaccatcaaggtcccggtggacaagatcggtgaggtc
atcggccccaagggcaagatgatcaactcgatcaccgaggagaccggcgccaacatctcc
atcgaagatgacggcaccgtctacgtcggtgcagcggacggcccgtccgcgcaggccgcg
atcgacaagatcaacgccatcgccaacccgcagctgccgaaggtcggcgagcgcttcctc
ggcaccgtggtcaagaccacggcgttcggagcgttcgtctccctgctccccggccgcgac
ggcctggtgcacatcagcaagctcggcaacggcaagcgcatcgccaaggtcgaggacgtc
gtgaacgtcggttcgaagatccgcgtcgagatcgccgacatcgacaaccgcggcaagatc
agcctcgtccccgtcgaggacgagtcggccgaggctgctgcgaccggcgagaacgccgag
tcctga
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