Rhodococcus pyridinivorans SB3094: Y013_01635
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Entry
Y013_01635 CDS
T02974
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rpy
Rhodococcus pyridinivorans SB3094
Brite
KEGG Orthology (KO) [BR:
rpy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpy03019
]
Y013_01635
Enzymes [BR:
rpy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Y013_01635
Messenger RNA biogenesis [BR:
rpy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Y013_01635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
AAA_22
AAA_30
nSTAND3
WHD_HA2
nSTAND_NTPase5
AAA_16
NACHT
SLFN-g3_helicase
ResIII
T2SSE
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AHD19496
UniProt:
V9X7T8
LinkDB
All DBs
Position
complement(345230..349123)
Genome browser
AA seq
1297 aa
AA seq
DB search
MSISPAPNRRELRAALSEVSLRDVNRLRRRLDRARGGEALTEVAAEIETARARLASRASS
VPEIRYPEDLPVSQRKDDIAAAIRDHRVVVVAGETGSGKTTQIPKICLELGRGVRGLIGH
TQPRRIAARAVAERLAEELDTELGDAVGYTVRFNDQVTESTLVKLMTDGILLAEIQRDRL
LRQYDTLIIDEAHERSLNIDFLLGYLAQLLPRRPDLKVIITSATIDPERFARHFADANGT
PAPIVEVSGRTYPVEVRYRPLTVEVGDTLVDRDPVDAVCEAVEELQCEGDGDILVFLSGE
REIRDTADALRDRKLRNTEILPLYGRLSAAEQHRVFAPHTGRRVVLSTNVAETSLTVPGI
RYVVDPGTARISRYSVRTKVQRLPIEPISQASARQRAGRCGRVADGICIRLYSEDDFDGR
PEFTEPEILRTNLASVVLQMTALGLGDIEAFPFVEAPDPRAIRDGIALLEELGALEPAKK
GETPRLTATGREIARLPVDPRMARMIVEGHRNGCLREVLIIVAALSIQDVRERPTEFQQA
ADEKHARFAVEGSDFLAFLRLWDYLKEQRRELSSSRFRRLCRDEFLHWLRIREWQDLQGQ
LRQITVDMGWQTHHRDVNPDDVHKSLLAGLLSHIGLREGDKRDFLGARGARFAVFPGSSL
FKKPPRWVMAAELVETSRLWARTAARIEPEWVEKLAPHLVKRTYSEPHWSTRRESAMAYE
RVTLYGIPLVAQRPVPYGRIDPEVSRELFIRHALVQGEWRTQHKFFHDNRALLEDVEELE
HRARRRDIVVDDETLFDFYDQRVGPEAISARHFDAWWKKTRRQQPDLLTFTPDTLVNQDA
ASVLEGDYPDAWRQGEIQFPLTYQFEPGTEEDGVTARVPVALLANLKSVGFDWLVPGMRT
ELVTALIKTLPKHLRRQVVPAPDFAAAALASVTPRSEPLVNAMARELSRLGRCTIESSDF
DTGALPDHLRMTFAAVDERGTVLGRSKSLAALRKKLAPRVEAEVSRAAAGTERPAAVVWT
AETLGNLPETVTREVGGRKVTGYPALVAEKDGVAVRVLSTPQAQQNATRQGLRALLLSSA
PTKAKAVTSGLTNMERLALGRNPDGSFEALIEDCRACAVDELIAAHGAPVRTPDEFEALA
STVRSHLPGRVARLLKAVVPVLSRAHEVGVLLDRSDGEAADDVREQLQSLLFPGFVTDLG
SRRIADLPRYLTAAAQRLEALPASAHRDAAGMDVLDRVYGAYDKLLARLPEERRAAPEVV
EIYWMIEELRVSLFAQGLGTRIPVSEKRVLKAIDGIR
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atgtccatctcccccgccccgaatcgtcgcgaactgcgcgctgccctgtccgaggtctcc
ctccgcgacgtgaaccgcctccgtcgcaggctcgaccgggcgcggggcggcgaggcgctg
accgaggtcgccgccgagatcgagaccgcccgcgcccggctcgcgtcccgtgcgtcgtcg
gtcccggagatccgttatcccgaggacctaccggtctcgcagcgcaaggacgacatcgcc
gccgcgatccgcgaccaccgggtcgtagtggtcgccggtgagaccggttcgggcaagacg
acgcagatcccgaagatctgtctcgaactcgggcgcggggttcgcggcctgatcggccac
acccagccgcgccgtatcgccgcgcgcgccgtcgccgagcgactcgcggaggaactggac
accgagctcggcgacgccgtcggatacacggtgcgcttcaacgatcaggtcaccgagtcg
acactcgtcaagctgatgaccgacggcatcctcctcgccgagatccagcgcgaccgcctg
ctgcgccagtacgacacgctcatcatcgacgaggcgcacgagcgcagcctcaacatcgac
ttcctgctcggctacctcgcgcagctgcttccgcgtcgccccgacctgaaggtgatcatc
acctcggcgacgatcgaccccgaacgtttcgcgcgccacttcgccgacgcgaacggcacg
cctgcccccatcgtggaggtctccggccgcacctatcccgtcgaggtgcgttaccggccg
ctgaccgtcgaggtgggcgacacgctggtcgaccgcgaccccgtcgacgcggtgtgcgag
gccgtcgaggaactccagtgtgagggcgacggcgacatcctggtcttcctctccggcgag
cgcgagatccgcgacaccgccgacgcactgcgcgaccgcaagctccgcaacaccgagatc
ctcccgctctacggacgcctgtcggcggccgaacagcaccgggtcttcgcaccgcacacg
ggccggcgggtcgtgttgtccaccaacgtcgccgagacgtccctgacggttcccggcatc
cgctacgtcgtcgaccccggcaccgcacgtatctcgcggtactcggtgcggacgaaggtg
cagcgactgccgatcgagccgatctcgcaggcctcggcgcggcagcgcgccggacggtgc
ggtcgtgtcgccgacggcatctgcatccgtctgtactcggaggacgacttcgacggccgg
ccggagttcaccgagcccgagatcctgcgcaccaacctcgcgtcggtagtgttgcagatg
acggcgctcggtctcggcgacatcgaggcgttcccgttcgtggaggccccggatccccgc
gcgatccgcgacggcatcgctctgctcgaggagctcggcgcgctcgaacccgccaagaag
ggcgagacgccgcgcctgaccgcgacgggccgcgagatcgcccgcctgcccgtcgatccg
cgcatggcccgcatgatcgtcgagggccaccggaacggatgtctgcgcgaggtgctcatc
atcgtcgcggccctgtcgatccaggacgtgcgcgaacgcccgaccgagttccagcaggcc
gccgacgagaagcacgcccggttcgcggtcgagggctcggacttcctggccttcctgcga
ttgtgggactacctgaaggagcaacggcgggaactgtcgtcgagcaggttccgcaggttg
tgccgcgacgagttcctacactggttgcggatccgtgagtggcaggacctgcaggggcag
ctccgtcagatcaccgtcgacatgggctggcagacgcaccaccgcgacgtgaatcccgac
gacgtccacaagtccctgcttgcaggtctgctgtcgcacatcggtcttcgcgagggcgac
aagcgcgacttcctcggtgcccgcggcgcacggttcgccgtcttcccgggatcgtcgttg
ttcaagaagcctccgcgctgggtcatggccgccgaactcgtggagacctcacggctgtgg
gcgcggacggccgcgcgcatcgaacccgaatgggtcgagaagctcgctccgcacctggtc
aagcgcacctactcggagccgcactggtcgacgcgccgcgagtcggcgatggcctacgaa
cgcgtcacgctctacggcatccccctggtcgcccagcgtcccgtgccgtacggacggatc
gatccggaggtctcgcgcgaactgttcatccgccacgccctcgtgcaaggcgaatggcgc
acgcagcacaagttcttccacgacaaccgggcgctgctcgaggacgtcgaggaactcgaa
caccgtgcgcgccggcgcgacatcgtcgtcgacgacgagaccctgttcgacttctacgac
cagcgggtcggcccggaggcgatctcggcccggcacttcgacgcgtggtggaagaagacc
cgcaggcagcaacccgacctgctgacgttcacgccggacaccctggtgaaccaggacgcc
gcctcggtgctcgagggcgactatccggacgcgtggcgccagggcgagatccagttcccc
ctcacctaccagttcgagccgggcacggaggaggacggtgtcaccgcccgcgtccccgtc
gcgctgctcgcgaacctcaagtccgtcggtttcgactggctggtacccgggatgcggacc
gagctggtcacggccctcatcaagacccttccgaaacaccttcggaggcaggtcgtaccg
gctcccgatttcgcagcggccgccctcgcctcggtgacgccgcgctccgaaccgctcgtc
aatgcgatggcccgcgagctgtcccggctcggccggtgcacgatcgagtcctcggacttc
gataccggtgcgttgcccgaccatctgcggatgaccttcgccgcggtcgacgagcgcggc
accgtgctcggccgcagcaagagcctggcggcccttcggaagaagttggctccgcgggtc
gaagcggaggtctcgcgcgccgctgcgggcaccgaacgtcccgcggcggtggtgtggacg
gccgagaccctcgggaacctgccggagaccgtcacccgcgaggtcggtggccggaaggtc
accggttaccctgccctggtcgcggagaaggacggcgtcgcggtgcgcgtgctcagcaca
ccgcaggcccagcagaacgcgacgcgtcaggggttgcgtgccctgcttctgtcgtcggca
ccgacgaaggcgaaggccgtgacctcggggctgaccaacatggagcggctcgcgctcggg
cggaaccccgacggatcgttcgaagcgctgatcgaggactgccgtgcctgcgcggtggac
gaacttatcgccgcacacggcgcacccgtgcgcacgcccgacgagttcgaggcgctcgcg
tccacggtgcggtcacacctgccggggcgcgtggcccgtctgttgaaagcggttgtgccc
gtgctgtcccgcgcccacgaggtgggtgtgctcctcgatcggtcggacggcgaggctgcc
gacgacgtacgcgaacagctgcagtcgttgctgttccccggcttcgtcaccgatctgggg
tcgcggcggatcgctgacctgccgcgctatctcaccgcggccgcgcaacgcctggaggcg
ttgccggcgagtgcgcatcgcgatgccgcgggaatggatgtgctcgatcgcgtctacggc
gcctacgacaagctactcgcacgactgccggaggaacggcgcgccgcgcccgaggtggtc
gagatctactggatgatcgaggaactgcgcgtgagcctgttcgcgcagggtctcggaacg
cggatcccagtgtcggagaagcgcgtcctgaaggcgatcgacgggatccggtag
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