Rhodococcus pyridinivorans SB3094: Y013_02225
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Entry
Y013_02225 CDS
T02974
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rpy
Rhodococcus pyridinivorans SB3094
Pathway
rpy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Y013_02225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpy03019
]
Y013_02225
03400 DNA repair and recombination proteins [BR:
rpy03400
]
Y013_02225
Enzymes [BR:
rpy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Y013_02225
Messenger RNA biogenesis [BR:
rpy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Y013_02225
DNA repair and recombination proteins [BR:
rpy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Y013_02225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF3553
TniB
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AHD19600
UniProt:
V9XC82
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All DBs
Position
complement(461828..463561)
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AA seq
577 aa
AA seq
DB search
MYRSSSDIASEDAREELCAAAQKVFGWDTLRPEQLDAMVPLLGGRDVLAVMATGSGKSAI
YQVPSLLLPGVTVVVSPLIALQNDQIAGLDHSEAPEAVAINSRQRESENEANWRAVLEHD
ADYVFLAPEQLAKDEVLERLRSVEVSLLVVDEAHCVAMWGHDFRPEYLRLGDVAEALGRP
PVVALTATASPPVREDIVEALRMRDPLVVAGGFDRPNLDIEVRRHTDDGEKRRAVVEAVA
SLPGPGILYAATRKDTERYAEALRERGIDACPYHAGMRAAERGDVHLGFLDGRCDVVVAT
SAFGMGIDKPDVRFVVHASIPDSVDSYYQQIGRAGRDGEPATVLMFYRPEDLSLATFFTT
HNPDEELIGRVFSAVRSASPMRLGRLRTELDVRGRRLANAVNLLERCGALVSGRRGLSAA
DIPRRKAVEHARETAASGERLDRSRVEMMRGYAETRGCRRRFLLGYFGETLSDPCGRCDT
CRDGASDEVATVSVLRGADTAPAYCETSVFAPNTHVVHAEWGPGVVMTCEHDRVTVLFDS
EGYRTLSLDAVAESGVLKVDDPAPAEPVPAHAEEPVA
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgtatcggtcgtcgtccgacattgcatcggaggatgcacgcgaggaactctgcgccgcc
gcgcagaaggtgttcggctgggacacgctgcgtcccgaacaactggacgcgatggttccg
ctgctgggcggacgcgacgtcctcgccgtgatggccactggctccgggaagtccgcgatc
tatcaggtgccctcgctgctgctaccgggggtgacggtcgtcgtctcgcccttgatcgcg
ctccagaacgatcagatcgccggtctggaccactcggaggcacccgaggcggtcgcgatc
aattcgcgccagcgcgagtcggagaacgaggcgaactggcgggccgtgctcgaacacgat
gccgactacgtcttcctcgcccccgagcagctcgccaaggacgaggtcctggagcgtctg
agaagcgtggaggtctcgctcctcgtcgtcgacgaagcgcactgtgtcgccatgtggggc
catgacttcaggccggaatatctacgcctgggagacgtggccgaggccctgggccggcca
cccgtcgtcgcgctcaccgccaccgcctcacccccggtccgcgaggacatcgtcgaggcg
ttgcgcatgcgggatccgctcgtcgtcgccggtggtttcgaccgcccgaatctcgacatc
gaggtgcgcaggcacactgacgacggcgagaagcgacgcgccgtcgtcgaggccgtggcg
tccctgcccggtcccggcattctgtacgccgcgacccgcaaggacaccgagcgatacgcc
gaggccctgcgtgaacgcgggatcgacgcgtgcccgtatcacgccgggatgcgcgcggcc
gagcgcggggacgttcacctcggattcctcgacggtcgctgcgatgtcgtggtggcgacc
tccgccttcggtatgggcatcgacaagccggacgtgcgtttcgtcgtgcacgcctcgata
ccggactcggtcgattcctactaccagcagatcgggcgcgccggacgcgacggggagccg
gccaccgtcctgatgttctaccgtcccgaggatttgtcgctcgcgaccttcttcaccacc
cacaaccccgacgaggagctgatcggccgggtgttctcggcggtccgctccgcgtcgccg
atgaggctcggacggctgcgtaccgagctcgacgtgcgggggcggagactggccaacgcg
gtgaacctgctcgaacggtgcggagcgctcgtctccggccggcgtggactctccgccgcc
gacatcccccgacggaaggcggtcgagcacgcacgcgagacggccgcgtcgggcgaacga
ctggaccgatcgcgggtcgagatgatgcggggctacgccgagactcgcggttgccgccgc
cggttcctgctcgggtacttcggcgagacgctgtccgacccctgcggccggtgcgacacc
tgccgggacggcgcgtccgacgaggttgcgacggtatccgtgcttcggggcgccgatact
gccccggcgtactgcgagacgtccgtgttcgccccgaacacgcatgtcgtgcatgccgag
tggggaccgggagtggtgatgacctgcgagcacgatcgcgtcaccgtcctgttcgacagc
gagggttatcggacactgtcgctcgatgcagtcgccgagtcgggggtgctgaaggtcgac
gaccccgcaccggcagagcccgtacctgcccatgccgaagaacccgtggcgtga
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