Rhodococcus pyridinivorans SB3094: Y013_04800
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Entry
Y013_04800 CDS
T02974
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
rpy
Rhodococcus pyridinivorans SB3094
Pathway
rpy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Y013_04800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpy03400
]
Y013_04800
DNA repair and recombination proteins [BR:
rpy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Y013_04800
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Y013_04800
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
AAA_29
SMC_N
AAA_21
RsgA_GTPase
AAA_16
AAA_25
NACHT
AAA_22
DnaJ_CXXCXGXG
ExoX-like_C
Viral_helicase1
ScfRs
NTPase_1
cobW
BCA_ABC_TP_C
Motif
Other DBs
NCBI-ProteinID:
AHD20039
UniProt:
V9XDC6
LinkDB
All DBs
Position
complement(1011291..1014284)
Genome browser
AA seq
997 aa
AA seq
DB search
MADRLIVRGAREHNLRGVDLDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSA
YARQFLGQMDKPDVDFIEGLSPAVSIDQKSTNRNPRSTVGTITEVYDYLRLLYARAGTPH
CPVCGEQISRQTPQQIVDQVLEMEAGARFQVLAPVVRTRKGEFVDLFEQLTIQGYSRVRV
DGVVHPLSDPPKLKKQEKHDIEVVVDRLAVKPSAQQRLTDSIETALRLAEGVVVLDFVDR
EEDAPDRERRFSENLACPNAHPLSIDELEPRSFSFNSPYGACPECAGLGVRKEVDPDLVV
PDPDLSLADGAIAPWSMGQSAEYFGRLLSGLADALEFDIDTPWRKLPAKVRKAVLEGSTE
QVHVRYKNRYGRVRSYYAEFEGVMPFLHRRLEQSESEQAKERYEGYMREIPCPACAGARL
RPEILAVTVSAGDFGAMSIAEVSDLSIAECARFLDGLVLGAREAAIAGQVLKEIQARLGF
LLDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLID
TLTRLRDLGNTLIVVEHDEDTVRASDWVVDIGPRAGEHGGTVVHSGTYKELLDNPESLTG
AYLSGREEIEIPALRRPIDKDRQVTVVGARENNLREIDVAFPLGVLTCVTGVSGSGKSTL
VNDILATVMANKLNGARQVPGRHTRINGLDQLDKLVQVDQSPIGRTPRSNPATYTGVFDK
IRSLFASTTEAKVRGYQPGRFSFNVKGGRCEACSGDGTLKIEMNFLPDVYVPCEVCHGAR
YNRETLEVHYKGKTIAEVLDMSIEEAAEFFRPVTSIHRYLNTLAEVGLGYVRLGQPATTL
SGGEAQRVKLAAELQKRSNGRTAYILDEPTTGLHFEDIRKLLGVINGLVDKGNTVIVIEH
NLDVIKTADWIIDMGPEGGSGGGTVVAEGTPEEVVTVEESYTGRFLAEILDGRITAPASA
PVRKRATKATKATATKTAATKSATKAKTAKKKVAAAS
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
gtggcagaccgcctgattgtgcgtggagcccgggaacacaacctgcgtggtgtcgacctg
gacctgccgcgcgacagtctgatcgtgttcaccgggctgtcgggttcgggcaagtcgagc
ctcgcgttcgacaccatcttcgccgaggggcagcggcgctacgtcgaatcgttgtcggcc
tacgcccgccagttcctcggtcagatggacaagccggacgtcgacttcatcgagggcctg
tcgcctgcggtgtcgatcgaccagaaatccaccaaccgcaacccgcggtccaccgtgggc
accatcaccgaggtctacgactacctgcgtctgctgtacgcccgggccggcactccgcac
tgcccggtctgtggcgagcagatctcccggcagacgccgcagcagatcgtcgaccaggtg
ctggagatggaggccggggcccgtttccaggtcctcgcacccgtcgtgcgcacccgcaag
ggcgagttcgtcgacctcttcgagcagctgaccatccagggctactcccgcgtgcgcgtc
gacggggtcgtccaccccctgtccgatccgccgaagctgaagaagcaggagaagcacgac
atcgaggtcgtcgtcgaccgcctcgccgtcaagcccagtgctcagcagcgcctcaccgac
tccatcgagaccgcgctgcggctcgccgagggtgtcgtcgtgctcgacttcgtcgatcgc
gaggaggacgcacccgaccgcgagcgccggttctcggagaacctggcgtgtccgaacgcg
cacccgctgtccatcgacgaactcgagcctcggtcgttctccttcaactcgccctacggc
gcgtgccccgagtgcgcgggtctcggcgtgcgcaaggaggtcgatcccgatctcgtcgtg
cccgacccggatctgagcctggccgatggcgcgatcgcaccgtggtcgatgggtcagagc
gccgaatacttcggccgactgctgtccggcctggccgacgccctcgaattcgacatcgac
accccgtggcggaaactgcccgccaaggtgcgcaaggccgtgctggagggcagcaccgag
caggtgcacgtgcgctacaagaaccgctacggccgcgtccgctcgtactacgccgagttc
gagggcgtcatgccgttcctgcaccgccgcctcgagcagtccgagtccgagcaggccaag
gaacgctacgagggctacatgcgggagatcccgtgcccggcctgcgccggtgcccgcctt
cgtcccgagatcctggccgtgacggtcagcgcgggcgacttcggtgcgatgtccattgcc
gaggtgagcgacctgtcgatcgccgagtgcgcacgcttcctcgacggtctcgtcctcggc
gcccgcgaggccgccatcgctgggcaggtcctcaaggagatccaggcccggctcggcttc
ctgctcgacgtcggactcgactacctcaccctctcgcgcgccgcgggcaccctctccggt
ggtgaggcacagcgcatccgtctcgccacgcagatcggatccggtctcgtcggcgttctg
tacgtgctcgacgagccgtcgatcggtctgcatcagcgcgacaaccgtcgtctcatcgac
accctcacgcgactgcgcgatctgggcaacacgctcatcgtcgtcgagcacgacgaggac
accgtccgtgcctccgactgggtcgtcgacatcggaccgcgcgcgggcgagcacggcggg
acggtcgtccacagcggcacttacaaggagctgctcgacaacccggaatcgctcaccggc
gcctatctgtccggacgcgaggagatcgagatccccgcgctccggcggccgatcgacaag
gaccggcaggtcaccgtcgtcggcgcccgcgagaacaatctgcgcgagatcgacgtggcg
ttcccactcggcgtcctcacctgcgtcaccggtgtctccggctccgggaagtcgacactc
gtcaacgacatcctcgcgacggtgatggccaacaagctcaacggcgcgcggcaggttccc
ggacggcacacccgcatcaacggactcgaccagctcgacaagctcgtgcaggtcgaccag
tcgccgatcggccgcaccccgcgctcgaaccccgcgacctacacgggtgtattcgacaag
atccgcagcctgttcgcctccaccaccgaggcgaaggtgcgaggctaccagccgggtcgg
ttctcgttcaacgtcaagggcgggcggtgcgaggcgtgctcgggcgacggcacgttgaag
atcgagatgaacttcctgcccgacgtgtacgtgccgtgcgaggtgtgccacggcgcccgc
tacaaccgcgaaacgctcgaggtgcattacaagggcaagaccatcgccgaggtgctcgac
atgtcgatcgaggaggcggcggagttcttccggccggtcacctccatccaccgctacctc
aacacgctggcggaggtcggtctcggttacgtgcgcctgggccagccggcgacgaccctg
tccggcggtgaggcgcagcgcgtcaagctcgccgccgaactgcagaagcgttccaacggg
cgcaccgcgtacatcctcgacgagcccaccacgggcctgcacttcgaggacatccgcaag
ctgctcggggtcatcaacggtctggtcgacaagggcaacaccgtgatcgtcatcgagcac
aacctcgatgtcatcaagaccgccgactggatcatcgacatgggtcccgagggcggttcc
ggtggcggcacggtggtcgcggagggcactccggaagaggtggtcacggtggaggagagc
tacaccggacgcttccttgcggagatcctcgacgggcggatcactgcacctgcttccgcg
ccggtacgcaagcgcgcgacgaaggcgaccaaggcgaccgcgaccaagactgccgctacg
aagtcggccacgaaggcgaagaccgccaagaagaaggtggcggccgcgagctga
DBGET
integrated database retrieval system
