Rhodococcus pyridinivorans SB3094: Y013_05085
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Entry
Y013_05085 CDS
T02974
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rpy
Rhodococcus pyridinivorans SB3094
Pathway
rpy03030
DNA replication
rpy03410
Base excision repair
rpy03420
Nucleotide excision repair
rpy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Y013_05085
03410 Base excision repair
Y013_05085
03420 Nucleotide excision repair
Y013_05085
03440 Homologous recombination
Y013_05085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpy03032
]
Y013_05085
03400 DNA repair and recombination proteins [BR:
rpy03400
]
Y013_05085
Enzymes [BR:
rpy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Y013_05085
DNA replication proteins [BR:
rpy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Y013_05085
DNA repair and recombination proteins [BR:
rpy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Y013_05085
NER (nucleotide excision repair)
GGR (global genome repair) factors
Y013_05085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_A_exo1
HHH_5
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
AHD20082
UniProt:
V9XFI7
LinkDB
All DBs
Position
complement(1067679..1070402)
Genome browser
AA seq
907 aa
AA seq
DB search
MTRASTSATSTAATDDRPTLLLLDGHSLAFRAFYALPAENFKTHSGQTTNAVYGFTSMLI
NLLRDEQPTHVAAAFDVSRKTFRAELFAAYKAQRSAAPDDFKGQIDLTKDVLGAMGIPVM
AIEGYEADDIIATLATQAHAQGFRVLVVTGDRDALQLVNGDITVLYPRRGVSDLTRFTPD
AVEEKYGLTPQQYPDFAALRGDPSDNLPGIPGVGEKTAAKWIREYGSLSGLVDRVDEVRG
KTGDALRENLSNVLLNRQLTEMVRDVAVPYTPEQLALAPWDRDRIHRLFDDLEFKVLRDR
LFETLSSAEPEAEEGFEVRGGIVEPGALGDWLAEHAPAGRRHGLAVVGTGTPYGGDATAI
AVAGADGEGAYVSTVALTPEDENALAAWLANPAVEKAVHEAKFAIHALRGRGWTLAGITS
DTALAAYLVRPGQRSFKLDDLSLRYLKRELRVEDTGAQQLSLLDDEDAADAQAAEAQILA
ARAVVDLAAALDTELGEIESVRLLTEMELPLLEVLAELEATGIAVDSAHLHDLQSEFAAQ
VAAAANAAYEVIGKQINLGSPKQLQVVLFDELEMPKTKKTKTGYTTDADALQNLFDKTGH
PFLEHLLAHREHTKMKTTVDGLIKSIADDGRIHTTFNQTVAATGRLSSTEPNLQNIPVRT
EAGRRIRDGFVVGDGFDVLLTADYSQIEMRIMAHLSADEGLIEAFRTGEDLHTFVASRAF
GLPLEEVTPELRRRVKAMSYGLAYGLSAYGLAQQLKISTDEAREQMEAYFTRFGGVRDYL
YNVVEEARKVGYTSTLYGRRRYLPDLNSDNRQRREIAERAALNAPIQGTAADIIKVAMID
VQKALSEAGLRSRMLLQVHDELVLEVVEAEREQVEALVRDKMDSVIELSVPLEVSVGYGR
SWDAAAH
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
gtgacccgtgcatccacttccgcgacgtccaccgcggccaccgacgaccgcccgaccctg
ctgctcctcgacggccattccctcgcgttccgcgcgttctacgcgctgcccgccgagaac
ttcaagacccacagcgggcagaccacgaacgcggtctacgggttcacctccatgctcatc
aacctgctgcgcgacgagcagcccacgcacgtcgcggcggcattcgacgtcagccgcaag
accttccgtgccgaactgttcgccgcctacaaggcccagcgcagcgccgcacccgacgac
ttcaaggggcagatcgacctcaccaaggacgtcctcggcgcgatggggatcccggtgatg
gcgatcgagggctacgaggccgacgacatcatcgccacgctcgcgacgcaggcgcacgcc
cagggcttccgggtgctcgtggtgaccggcgaccgcgacgcgctccaactcgtcaacggc
gacatcacggtgctgtatccgcggcgcggcgtctccgacctgacgcgcttcacccccgac
gcggtggaggagaagtacggactcaccccccagcagtatccggacttcgcggcgctgcgc
ggcgacccgagcgacaacctgcccggcatccccggcgtgggcgagaagaccgccgcgaaa
tggatccgcgagtacggaagcctgagcggactcgtcgaccgcgtcgacgaggtgcgcggc
aagaccggcgacgcgctgcgcgagaacctgtccaacgtgttgctcaaccgccagctcacc
gagatggtgcgcgacgtggccgtgccgtacacccccgaacaactcgccctcgccccgtgg
gaccgcgaccgcatccaccgcctgttcgacgacctcgagttcaaggtgctgcgcgaccgg
ctgttcgagacgctctcgtcggccgagcccgaggccgaggagggcttcgaggtgcgcggc
gggatcgtcgagccgggtgccctcggcgactggctcgccgagcacgccccggcgggtcga
cgtcatggcctcgccgtggtgggcaccggcactccctacggaggcgacgcgaccgcgatc
gccgtcgccggggccgacggtgagggcgcctatgtgagcacggtggcgctcacgcccgag
gacgagaacgccctcgccgcatggctcgcgaaccccgccgtggagaaggccgtgcacgag
gcgaagttcgccatccacgcgctgcgcggacgcggctggacgctcgccggcatcaccagc
gataccgcgctcgccgcctatctggtgcggcccggccagcgctcgttcaagctcgacgac
ctgtcgctgcgctacctcaagcgtgagctgcgagtggaagacaccggcgcgcaacaactc
tcgttgctcgacgacgaggacgccgccgacgcgcaggcggccgaggcgcagatcctcgcg
gcgcgcgccgtcgtcgacctcgccgcggccctcgacaccgaactcggcgagatcgaatcg
gtgcgcctgctcaccgagatggaactgcccctgctcgaggtcctcgcagaactcgaggcc
accggcatcgccgtcgactcggcgcacctgcacgacctgcagtccgaattcgcggcccag
gtcgccgccgccgcgaacgccgcctacgaggtgatcggcaagcagatcaacctcggctcg
ccgaaacagttgcaggtggtgctgttcgacgagctcgagatgccgaagacgaagaagacc
aagaccggctacaccaccgacgcggatgccttgcagaacctgttcgacaagacgggccat
cccttcctcgaacacctgctcgcgcaccgtgagcacaccaagatgaagaccaccgtcgac
ggactcatcaagtccatcgccgacgacggtcgcatccacaccaccttcaaccagaccgtc
gcggcgacgggccggctctcgtcgaccgagccgaacctgcagaacattccggtgcggacc
gaggccggtcgccggatccgcgacggtttcgtggtgggcgacggattcgacgtgctgctc
accgccgactacagccagatcgagatgcgcatcatggcgcacctgtcggccgacgagggg
ctcatcgaggcattccgtacgggcgaggacctgcacaccttcgtggcgtcgcgggcgttc
gggctgccgctcgaggaggtcaccccggagctgcgtcgccgcgtcaaggcgatgtcctac
ggtctcgcctacgggttgagcgcctacggtctcgcccagcagctgaagatctccaccgac
gaggcccgcgagcagatggaggcctacttcacccgcttcggcggcgtgcgcgactacctc
tacaacgtggtcgaggaggcccgcaaggtcggctacacgtccaccctctacggccgccgc
cggtacctgcccgacctcaacagcgacaaccggcagcgccgggagatcgccgagcgcgcc
gcgctcaacgcccccatccagggcacggccgccgacatcatcaaggtcgcgatgatcgac
gtgcagaaggcgctcagcgaggccggactgcggtcgcggatgctgctgcaggtgcacgac
gaactcgtgctcgaagtggtcgaggccgagcgcgaacaggtcgaggcgctcgtgcgcgac
aagatggactccgtcatcgaattgtcggtgccgctcgaggtctcggtcggttacggccgc
agctgggacgccgcggcgcactga
DBGET
integrated database retrieval system
