Rhodococcus pyridinivorans SB3094: Y013_05665
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Entry
Y013_05665 CDS
T02974
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rpy
Rhodococcus pyridinivorans SB3094
Pathway
rpy03030
DNA replication
rpy03430
Mismatch repair
rpy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Y013_05665
03430 Mismatch repair
Y013_05665
03440 Homologous recombination
Y013_05665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpy03032
]
Y013_05665
03400 DNA repair and recombination proteins [BR:
rpy03400
]
Y013_05665
Enzymes [BR:
rpy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Y013_05665
DNA replication proteins [BR:
rpy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Y013_05665
DNA repair and recombination proteins [BR:
rpy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Y013_05665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AHD20186
UniProt:
V9X9R1
LinkDB
All DBs
Position
complement(1185515..1189051)
Genome browser
AA seq
1178 aa
AA seq
DB search
MADSFVHLHTHTEYSMLDGAAKVGPLFKEAERLGMPAVGMTDHGNMYGASEFYNVAKKFG
IKPIIGIEAYVAPESRFSTKRVQWGDPGQKSDDVSGSGAYTHMTMVAENSTGLRNLFKLS
SLASIEGQLGKWARMDEELIAHHHEGIIATTGCPSGEIQTRLRLGHEREALEAAAKWQEI
WGKDNFFLELMDHGLSIERRVREGLIEIGRKLDIPPLVTNDCHYVTKDAAANHEALLCIQ
TGKTLSDPTRFKFDGDGYYLKSAQEMREQWDREVPGACDNTLLIAERVQSYEDVWTHRDR
MPIFPVPEGETQASWLHKEVMRGLDRRFPAGPPREYVERAEYEISVINQMGFPAYFLVVG
DLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERVSMPDIDID
FDDRRRGEMVRYATERWGNDKVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADQITKAL
PPPIMAKDIPVSGITDPSHERYKEAAEVRQLIESNPDIKKIYDTALGLEGLIRNAGVHAC
AVIMSSEPLMDAIPLWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDAIENIK
VNRGIDLDLDTLPLEDPATYELLARGDTLGVFQLDGSAMRDLLRRMQPTGFEDIVAVLAL
YRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKEILADTYGLIVYQEQIMQIAQKVA
GYSLGQADLLRRAMGKKKKEILDEAYDGFAQGMKDNGFSQAAITALWDTVLPFAGYAFNK
SHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLSDCRKMGITVLPPDVNE
SHTNFMSVGEDIRFGLGAVRNVGTNVVASIIKGREEKGRYTDFSDYLNKIDTVACSKKVT
ESLIKAGAFDSLGHPRKGLMLVHADAIDAVMSTKKAEAIGQFDLFGGDDADESVAAVFNV
RIPEEEWDTKHRLALEREMLGLYVSGHPLNGVEHVLASQADTQIPAILEGALKDGSQVTV
GGILASVNRRINKNGLAWASAQLEDLTGGIEVLFFPQSYAVYGMDVVEDSVVLVKARVSI
RDDRISLIANDLAVPDLSQIGVAKPVSVSMPTRLCTPDKVGALKNVLTRHPGSSDVHVRL
ITGSKVTVLKLDDSLRVEASSALMGDLKALLGPGCLAT
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
gtggctgactcgttcgttcatctgcacacccacaccgagtactcgatgctcgacggtgcc
gcgaaggtcggaccgttgttcaaggaggccgaacggctggggatgccggccgtgggcatg
accgaccacggaaacatgtacggcgccagcgagttctacaacgtcgccaagaagttcggc
atcaagccgatcatcggcatcgaggcgtacgtcgcgccggagtcgcgcttctccaccaag
cgtgtgcagtggggtgatcccggccagaagtccgacgacgtctccggctcgggtgcctac
acccacatgacgatggtcgccgagaactcgacgggcctgcggaacctgttcaagctgtcc
tccctcgcatcgatcgagggtcagctcggcaagtgggcccgtatggacgaagagctcatc
gcccaccatcacgagggcatcatcgccacgaccggctgcccgtcgggcgagatccagacg
cgcctgcgcctcggccacgagcgcgaagcgctcgaagccgccgcgaagtggcaggagatc
tggggcaaggacaacttcttcctagagctgatggaccacggcctgtccatcgagcgccgt
gtgcgcgagggtctgatcgagatcggccgcaagctcgacatcccgccgctggtgaccaac
gactgccactacgtcaccaaggatgcggccgcgaaccacgaggcgctgctgtgcatccag
accggtaagaccctctccgatcccacccggttcaagttcgacggcgacggctattacctc
aagtcggcgcaggagatgcgcgagcagtgggaccgcgaggtgccgggtgcgtgcgacaac
acgctgctcatcgccgagcgcgtgcagtcctacgaggacgtgtggacccaccgcgaccgg
atgccgatcttcccggtgccggaaggggagacgcaggcgagctggttgcacaaggaggtc
atgcgcggcctcgaccgtcgcttccccgccggcccgcctcgcgagtacgtcgagcgcgcc
gagtacgagatcagcgtcatcaaccagatgggcttccctgcttacttcctcgtcgtcggc
gacctcatcaaccacgcccgcgaggtcggcatccgcgtcggccccggccgtggttcggcc
gccggttcgctcgtcgcctacgcgatgggcatcaccaacatcgacccgatcccgcacggt
ctgctgttcgagcggtttctcaaccccgagcgcgtgtcgatgcccgatatcgatatcgac
ttcgacgatcgtcgccgcggtgagatggtgcgctacgccaccgagcggtggggcaacgac
aaggtggcccaggtcatcacgttcggcaccatcaagacgaaggccgcgatcaaggactcc
gcgcgagtgcagttcggccagcccggattcgcgatcgccgaccagatcaccaaggcactt
ccgccgccgatcatggcgaaggacatcccggtctcgggtatcaccgatccgagtcacgag
cggtacaaggaagccgccgaggttcgtcagctgatcgagtccaacccggacatcaagaag
atctacgacactgcgctcggtctcgagggcctgatccgcaacgcgggcgtccacgcctgc
gcggtgatcatgtcgtccgagccgctcatggacgcgatcccgctgtggaagcgcgcgcag
gacggcgcgatcatcaccggctgggattatccgtcctgcgaggccatcggcctgctgaag
atggacttcctcggtctgcgcaacctcaccgtcatcggcgacgcgatcgagaacatcaag
gtcaaccgcgggatcgatctcgacctcgacaccctcccgctggaggatccggcgacctac
gaactgctcgcgcgtggcgacacgctcggcgtgttccagctcgacggcagcgccatgcgc
gacctgctgcgccgcatgcagcccaccggcttcgaggacatcgtcgcggtgctcgcgctg
taccgccccggcccgatgggcatgaacgcgcacaacgactacgccgaccgcaagaacggg
cggcaagaggtcaagccgatccaccccgagctcgaggaaccgctgaaggagatcctcgcc
gatacctacggcctgatcgtctaccaggagcagatcatgcagatcgctcagaaggtggcc
ggttactcgctcggacaggcagacctgctgcgtcgcgcgatgggtaagaagaagaaggag
atcctcgacgaggcctacgacggcttcgcgcagggcatgaaggacaacggcttctcgcag
gcggcgatcaccgcgctgtgggacaccgttctgcccttcgccggttacgcgttcaacaag
tcgcacgccgccggctacggcctggtctcgttctggaccgcctacctcaaggcgaactac
ccggccgagtacatggccggtctgctcacctccgtcggcgacgacaaggacaaggccgcg
gtctatctgtccgactgccgcaagatgggcatcacggtgctgccgccggacgtcaacgag
tcgcacaccaacttcatgtcggtgggtgaggacatccggttcggcctcggcgccgtccgc
aacgtcggcacgaacgtggtcgcctcgatcatcaaggggcgggaggagaagggccgctac
accgacttctccgactatctcaacaagatcgacaccgtcgcgtgttcgaagaaggtcacc
gaatccctcatcaaggcaggtgcattcgactcgctcggacacccgcgcaagggattgatg
ctcgtccacgccgacgcgatcgacgcggtgatgagcacgaagaaggccgaggccatcggc
cagttcgacctgttcggcggcgacgacgccgacgagtccgtcgccgcggtgttcaacgtc
cgcatccccgaggaggaatgggacaccaagcaccgcctcgccctcgaacgggagatgctc
ggcctgtacgtctccgggcacccgctcaacggcgtcgagcacgtcctcgcgtcccaggcc
gacacccagatccccgcgatcctcgaaggcgcgctcaaggacggcagccaggtcaccgtc
ggcggcatcctcgcctcggtgaaccggcgcatcaacaagaacggtctcgcctgggcgtcc
gcgcagctcgaggacctcaccggtggcatcgaggtgctgttcttcccgcagtcctacgcc
gtctacggcatggacgtcgtggaggactcggtggtgctggtcaaggcccgggtgtcgatc
cgtgacgaccggatctccctgatcgccaacgatctcgccgtccccgacctgtcgcagatc
ggggtcgcgaagccggtctcggtgtcgatgcccacccggttgtgcacccccgacaaggtc
ggtgccctcaagaatgtgctcacgcgccatcccggttcgtccgacgtgcacgtgcggctc
atcaccggcagcaaggtcaccgtcctcaagctcgacgacagcctgcgggtcgaagcgtcg
tcggcgctcatgggcgacctcaaggccctgctcgggccgggctgcctggccacctag
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