Rhodococcus pyridinivorans SB3094: Y013_07360
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Entry
Y013_07360 CDS
T02974
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rpy
Rhodococcus pyridinivorans SB3094
Pathway
rpy03420
Nucleotide excision repair
rpy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Y013_07360
03430 Mismatch repair
Y013_07360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpy03400
]
Y013_07360
Enzymes [BR:
rpy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Y013_07360
DNA repair and recombination proteins [BR:
rpy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Y013_07360
MMR (mismatch excision repair)
Other MMR factors
Y013_07360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
AHD20495
UniProt:
V9XES8
LinkDB
All DBs
Position
complement(1545078..1548419)
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AA seq
1113 aa
AA seq
DB search
MSAKRLAEALGQLPPTTEQAAVIEAPPGPMLVVAGAGAGKTETMAARVVWLVANGLVEPE
QVLGLTFTRKAAQQLTARIRARLAKLAGSALLRDLDPSGGLRARILGSEPEVSTYHAYAG
RLLTEHGLLLPIEPSATLLSETELWQVAHRVVSSWDGELDTDRNPASVTEAVLALSGQLS
EHLVEPDLLRDAHVELEQLVHTLPPGPGQRGAPSKTLLGYLETQHARLQLLPLVERLSET
LRREGALDFGSQMSLAARVARDHREVGAGERERFRAVLLDEYQDTGHAQRVLLAALFGGG
ADPGLAVTAVGDPMQSIYGWRGASAANLPRFATDFPAADGEPAPTRELLTSWRNPPQALE
LANVSSEPLRDRGVSVSRLRPRPDAAAGDVRLALHSDVAVERDWVADRIADEYAAAREAG
RTPPTAAVLVRRNADAAPIAEALRARDLPVEVVGIGGLLHTPEVADVLAMLRLAADPLAG
SAAVRVLTGARWQLGAADLKALWERAQELAIAGRWGVAGAVTDPDALEDALDSALPGEYA
DQAGLADAISDPGDSSRYSKFGYARIVALGRELTSLRERLGQPLTELVAEVERVLGIGIE
TEARVGRRRGVAGREHLDAFASVVASYAGRTNATLPGLLSYLAAAEEIEQGLAPGEVEVD
PDRVQVLTVHSAKGLEWEVVAVPHVAAGVFPSSTAAATWLGSTTELPPHLRGDRVLPADD
PGSTDGVPVLELDDLSDRKMLERAIDSHKDALKRRKLDEDRRLFYVALTRTERTLFVSAH
HWADTGSEPKGPSPFLEELHEIVTARPELGAIDHWAPEPEPEEENPLTASPRSALWPRDP
LGARRTEVERGAALVLAEFDRTDLPTEYDDDPDEWATDVDALLAEREQRAEQSAEVVLPA
QLSVSQLVDLATDPDALAARLRRPLPFRPNPLARRGTAFHAWLERRFGATRLLDLDELPG
ADDEDGDDSHFDRLQEAFLRSKWASRNPVEVEVPFETALGGTVIRGRIDAVFEDPDGGWT
VIDWKTGAEPEGEKLAAVGVQLAAYRLAWAQLMAARTERLTGRPAELPLHKVRAAFHYVR
TGRTVAPEELPNAAMLERLVLEAGNLRGRADGE
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcgaagcgcctggcggaggcactgggacagttaccgccgacgaccgagcaggcc
gccgtcatcgaggccccgcccggcccgatgctggtcgtcgccggggccggtgccggcaag
accgagacgatggccgcgcgggtggtgtggctcgtcgccaacggtctcgtcgaacccgag
caggtgctgggcctgaccttcacgcgtaaggccgcgcagcagctcacggcccgcatccgg
gcgcgcctggccaagctcgccggatcggcgctcctgcgcgacctcgatccgagcggcggg
ttgcgcgcacggatcctcggcagcgaacccgaggtgagcacataccacgcatacgccggt
cgcctgctcaccgagcacggtctgctgctgcccatcgaaccgtcggcgacgctgctgtcc
gagaccgagctgtggcaggtcgcgcaccgcgtggtcagctcgtgggacggcgaactcgac
accgaccgcaatcccgcatcggtgaccgaggccgttctcgccctgtccggccagctctcc
gagcacctcgtcgagccggatctgctgcgcgacgcccacgtcgaactcgaacagctggtg
cacaccctcccgcccggcccggggcagcgcggagcaccgtcgaagacgctgctcggctac
ctcgaaacccagcacgcgcggttgcagttgcttccgctcgtcgaacggctgtccgagaca
ctgcgccgcgaaggtgctctcgacttcgggagccagatgtcgctcgccgcgcgggtcgcc
cgcgatcaccgcgaggtgggagccggggagcgggaacgattccgggctgtgctgctcgac
gagtaccaggacaccgggcacgcccagcgcgtgttgctcgccgccctgttcggcggtggc
gccgatcccggtctcgcggtcaccgcggtcggcgatcccatgcagtccatctacggctgg
cgcggcgcgtcggccgccaacctgccgcggttcgcgaccgacttcccggcggccgacggc
gagccggcacccacccgcgaactgctcaccagctggcgcaatccgccgcaggccctcgaa
ctggcgaacgtctcgtccgaacctctgcgcgatcgcggggtgtcggtcagccggttgcgt
ccccgccccgacgcggccgccggcgacgtccgcctcgcgttgcactccgacgtcgcggtg
gaacgcgactgggtcgccgaccggatcgccgacgagtacgccgccgcccgcgaggccgga
cgcacaccgccgaccgctgcggtcctcgtccgacgcaacgccgacgccgctccgatcgcc
gaggcgctgcgcgcccgcgaccttccggtcgaggtcgtcggcatcggcgggttgctgcac
acgcccgaagtcgccgacgtgctcgcgatgctgcgcctggcggcggatccgctggccggg
agcgcagctgtgcgggtgctcaccggcgcccgctggcagctcggtgccgccgacctgaag
gcactgtgggagcgcgcccaggaactggccatcgcgggacgctggggtgtcgccggtgcg
gtgaccgatcccgacgcgctcgaggacgccctcgattcggcgctgcccggtgaatatgcc
gaccaggccggtctcgctgatgcgatctccgatcccggcgacagcagccgctattcgaag
ttcggctacgcgcgcatcgtcgcgctcggtcgcgaattgacctccctgcgcgagcggctc
ggccagccgctcaccgaactcgtcgccgaggtcgagcgtgtgctcggtatcggcatcgag
accgaggcccgcgtgggccgccgacgcggtgtcgccggccgcgagcatctcgacgccttc
gcctcggtcgtcgcgtcctacgcggggcggaccaacgcgaccctgcccggtttgctgtcc
tatctcgcggcggcggaggagatcgagcaggggctcgcgcccggtgaggtggaagtcgac
cccgaccgcgtgcaggttctcaccgtccactccgcgaaaggcctcgaatgggaggtcgtc
gccgtcccacatgtcgctgccggggtcttcccatcctccaccgccgccgcgacctggctc
ggttcgacgaccgaacttcccccgcacttgcggggcgaccgggtgctgcccgccgacgat
ccgggcagcaccgacggtgtgcccgtgctcgagctcgacgacctctccgatcgcaagatg
ctcgagcgggccatcgactcccacaaggacgcgctcaagcgccgcaagctcgacgaggac
cgtcggctgttctacgtcgctctcacccgcaccgaacgaacactgttcgtctccgcccac
cactgggcagacaccggatccgaaccgaagggaccctcgccgttcctcgaggaactgcac
gagatcgtcacggcccggcccgaactcggtgcgatcgaccactgggctccggaacccgaa
ccggaggaggagaacccgctcacggcctcaccgcgcagcgcactgtggccgcgcgacccg
ctcggtgcccggcgcaccgaggtcgaacgcggcgcggcactggtcctcgccgagttcgac
cggaccgacctcccgaccgaatacgacgacgatcccgacgagtgggccaccgacgtcgat
gcgctcctggccgaacgcgaacagcgcgccgagcagagcgccgaggtggtgctgcccgca
cagctgtcagtcagccaactcgtcgatctcgccaccgatcccgacgccctcgccgcgcgt
ctgcgtcgtccgttgccgttccggcccaatccgctcgcgcgtcgcggcaccgccttccac
gcgtggctcgagcgcagattcggcgcgacgcgcctgctcgacctcgacgagcttcccggt
gccgacgacgaggacggcgacgattcgcacttcgaccggctccaggaggcattcctgcgg
tcgaagtgggcgtcgcgcaaccccgtcgaggtcgaggtgccgttcgaaacggccctgggc
ggcaccgtgatccgcggacgtatcgacgccgtcttcgaggatccggacggcggttggacg
gtcatcgactggaagaccggcgccgaaccggaaggcgagaagctcgccgcggtgggtgtg
cagctcgccgcctaccggctcgcctgggcccagttgatggcagcgcggaccgagcggctc
accggccgaccggccgaactgccgctgcacaaggtccgagcggccttccactacgtccgc
accggacgcaccgtcgcgcccgaggaactgccgaatgcggcgatgctcgaacgcctcgtg
ctcgaggcggggaatctgcgagggcgtgccgacggcgagtga
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