Rhodococcus pyridinivorans SB3094: Y013_09010
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Entry
Y013_09010 CDS
T02974
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rpy
Rhodococcus pyridinivorans SB3094
Pathway
rpy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rpy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Y013_09010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpy03021
]
Y013_09010
03400 DNA repair and recombination proteins [BR:
rpy03400
]
Y013_09010
Enzymes [BR:
rpy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Y013_09010
Transcription machinery [BR:
rpy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Y013_09010
DNA repair and recombination proteins [BR:
rpy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Y013_09010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AHD20796
UniProt:
V9XBI7
LinkDB
All DBs
Position
complement(1952791..1956762)
Genome browser
AA seq
1323 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDDELRHNELSTLEAEMEVEKKSVADQRDADLEARAQKLEAD
LAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLKPKDLIVDEMI
YRELQDRYGEYFTGAMGAEAIQKLIENFDIDAEAESLRETIRSGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVINEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFHLTRLVEDAPGAYT
AATADEPEQGVYSSPAEAQMAVDRGVLSVQAPIKVRLTQLRPPRDVENELFPEGWKFGEP
WTTQTTLGRVLFNELLPTNYAFVNDIMPKKRQAAIINDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTISMADVLVPPEKKDILERYETQADAIQRQYDRGKLSEDERRDSLVKLWQEA
TEEVGQVMEAHYPDDNPIPTIVKSGAAGNMTQIRSLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVAEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTPRGIEMTI
AELARDATGQPTGELVRDAHIETSTYARTLATDAVDANGNVVVERGSDLGDPAIEALLEA
GIQKVKVRSVLTCDTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTF
HQGGVGEDITGGLPRVQELFEARVPKGKAPIADVSGRIRLEDDDRFYKITIIPDDGGEEV
VYDKLSKRQRLHVIRKADGTEGVLADGDHVEVGQQLLEGSADPHEVLRVMGPRQVQVHLV
HEVQEVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLVERSEFEAANRRVVQ
EGGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIG
KLIPAGTGINKYRNIEVQPTEEARAAAYAIPAYDDQYYSPDGFGQNTGAAVPLDDYGYSN
DYR
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaactccggatcggcctggccaccgccgaggacatc
cgtaactggtcgtacggcgaggtcaagaagcccgagaccatcaactaccgcacgctcaag
cccgagaaggacggcttgttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgcgccaaggtccgccgtgagcgtatgggccacatcgagctcgccgctccg
gtgacgcacatctggtacttcaagggtgtgccgagccgcctcggctacctgctcgacctc
gcgccgaaggatctcgagaagatcatctacttcgccgcgtacgtcatcacgtcggtcgat
gacgagctgcgccacaacgagctctccactctcgaagccgagatggaggtcgagaagaag
tcggtcgccgaccagcgcgacgccgacctcgaggcccgtgcacagaagctcgaagccgac
ctcgccgaactcgaggccgagggcgccaagtccgacgtccgccgcaaggtcaaggacggc
ggcgagcgcgagatgcgtcagctccgcgaccgtgcgcagcgcgagctcgaccgcctcgac
gagatctggacgaccttcacgaagctgaagccgaaggacctgatcgtcgacgagatgatc
taccgcgagctccaggaccgctacggcgagtacttcaccggtgccatgggtgccgaggcg
atccagaagctcatcgagaacttcgacatcgatgccgaggccgagtcgctgcgcgagacc
atccgcagcggcaagggccagaagaagctccgtgctctcaagcgcctgaaggtcgtggcg
gcgttccagcagtccggcaactcgcccatgggcatggtgctcgacgccgtgccggtgatc
ccgccggaactgcgtccgatggtgcagctcgacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggtgcccccgagatcatcgtcaacaacgagaagcggatgctgcaggagtcggtcgacgcc
ctgttcgacaacggccgtcgtggccggccggtcaccggtcccggtaaccggccgctcaag
tcgttgtccgatctgctcaagggcaagcagggccgcttccgtcagaacctgctcggtaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggtccgcagctcaagctgcaccag
tgcggtctgccgaagctgatggcgctcgagctgttcaagccgttcgtgatgaagcgtctc
gtcgacctcaaccacgcgcagaacatcaagtccgccaagcgcatggtcgagcgtcagcgc
ccgcaggtgtgggacgtcctcgaagaggtcatcaacgagcacccggttctgctgaaccgt
gctcccacgctgcaccgcctcggtatccaggcgttcgagccgcagctcgtcgagggcaag
gccattcagctgcaccccctcgtgtgtgaggccttcaacgccgacttcgacggcgaccag
atggccgtgcatctcccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcgtcgaacaacatcctgtcgccggcatcgggccgcccgctcgccatgccgcgtctggac
atggtgacgggtctgttccacctgacccgtctggtcgaggacgcccccggcgcctacacg
gccgcgaccgccgacgagcccgagcagggcgtctactcgtcgccggccgaggcccagatg
gccgtcgaccgtggcgtgctgtcggtccaggctccgatcaaggtgcgcctgacccagctg
cgtccgccgcgcgacgtcgagaacgagctgttcccggagggttggaagttcggtgagccg
tggaccacgcagaccaccctcggtcgcgtgctgttcaacgagctgctgccgacgaactac
gcgttcgtcaacgacatcatgccgaagaagcgccaggccgcgatcatcaacgacctggcc
gagcggtacccgatgatcgttgtcgcgcagaccgtcgacaagctcaaggacgccggcttc
tactgggccacgcgttcgggtgtcaccatctcgatggcggacgtgctcgttccgccggag
aagaaggacatcctcgagcggtacgagacccaggccgacgccatccagcggcagtacgac
cgaggcaagctctcggaggacgagcgtcgcgactcgctcgtcaagctgtggcaggaagcg
accgaagaggtcggtcaggtcatggaggcgcactacccggacgacaacccgatccccacg
atcgtcaagtccggtgctgcgggcaacatgacccagatccgttcgctggcgggcatgaag
ggtctggtgacgaacccgaagggcgagttcatcccgcgcccgatcaagtcctccttccgt
gagggcctgaccgtcgccgagtacttcatcaacacgcacggcgcgcgtaagggtctggcc
gacaccgctctccgtaccgccgactcgggttacctgacccgtcgtctggtcgacgtctcg
caggacgtcatcgtccgcgaggtcgactgcggcacgccgcgcggcatcgagatgaccatc
gccgagctcgcacgcgacgcgaccggtcagccgaccggtgagctcgtgcgcgacgctcac
atcgagaccagcacctacgctcgcacgctggcgacggacgcggtcgacgcgaacggcaac
gtcgtcgtcgagcgtggttccgacctcggcgacccggcgatcgaggcgctgctcgaggcc
ggtatccagaaggtcaaggtccgctcggtcctgacctgcgacaccggcaccggcgtgtgc
gcgacctgctacggacgttcgatggcgacgggcaagctcgtcgacatcggcgaggccgtc
ggtatcgtcgccgcccagtcgatcggtgagcccggtacgcagctgacgatgcgtaccttc
caccagggtggcgtcggtgaggacatcaccggtggtctgccccgcgtccaggagctgttc
gaggctcgcgtccccaagggcaaggccccgatcgccgacgtctccggtcgcatccgtctc
gaggacgacgatcgtttctacaagatcacgatcatccccgacgacggtggcgaggaggtc
gtgtacgacaagctgtccaagcgtcagcgtctgcacgtcatccgcaaggccgacggcacc
gagggcgtgctcgcggacggcgatcacgtggaggtcggtcagcagctcctcgagggctct
gccgatccgcacgaggtgctgcgcgtgatgggcccgcgtcaggttcaggtccacctggtc
cacgaggtccaggaggtctaccggagccagggcgtgtcgatccacgacaagcacatcgag
gtcatcgtgcgtcagatgctgcgtcgcgtgacgatcatcgactcgggctcgacggagttc
ctgcccggttcgctcgtcgagcgcagcgagttcgaggctgcgaaccgtcgtgtggttcag
gagggcggcgagccggctgccggccgtccggtcctcatgggcatcacgaaggcgtcgctg
gccaccgactcgtggctgtcggcggcgtccttccaggagaccactcgcgtgctcaccgac
gcggcgatcaactgccgctcggacaagctgatcggtctcaaggagaacgtgatcatcggt
aagctgatccccgccggtaccggtatcaacaagtaccggaacatcgaggtccagccgacc
gaggaggcccgtgcggccgcgtacgccatcccggcgtacgacgaccagtactactcgccg
gacggcttcggccagaacaccggcgctgcagtgccgctggatgactacggttactccaac
gactaccggtag
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