Rhodococcus pyridinivorans SB3094: Y013_20435
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Entry
Y013_20435 CDS
T02974
Name
(GenBank) helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
rpy
Rhodococcus pyridinivorans SB3094
Pathway
rpy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rpy00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Y013_20435
09124 Replication and repair
03420 Nucleotide excision repair
Y013_20435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpy03021
]
Y013_20435
03400 DNA repair and recombination proteins [BR:
rpy03400
]
Y013_20435
Enzymes [BR:
rpy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Y013_20435
Transcription machinery [BR:
rpy03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Y013_20435
DNA repair and recombination proteins [BR:
rpy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Y013_20435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
DUF7108
Motif
Other DBs
NCBI-ProteinID:
AHD22830
UniProt:
V9XLI0
LinkDB
All DBs
Position
complement(4356174..4357832)
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AA seq
552 aa
AA seq
DB search
MADGPLIVQSDKTVLLEVDHDRANEARQAIAPFAELERAPEHIHTYRVTPLALWNARAAG
HDAEQVVDALVSHSRFAVPQALLVDIVDTMSRYGRLQLVKNPAHGLTLVSLDRAVLAEVL
RNKKIAPMLGARIDDDTVIVHPSERGRVKQMLLKIGWPAEDLAGYVDGEAHSISLDFETN
PWHLRDYQELAADSFWSGGSGVVVLPCGAGKTMVGAAAMAKAGATTLILVTNTVAGRQWK
RELIARTSLTEDEIGEYSGEKKEIRPVTIATYQVITRKSKGEYRNLELFDSRDWGLMIYD
EVHLLPAPVFRMTADLQSRRRLGLTATLVREDGREGDVFSLIGPKRFDAPWKDIEAQGWI
APADCVEVRVTLTDAERMAYAVAEPEERYKLCSTARTKIPVVKSILEQHQDAPTLIIGAY
IDQLDELGEALDAPVIKGSTKTKEREALFDRFRSGELKVLVVSKVANFSIDLPEASVAIQ
VSGTFGSRQEEAQRLGRLLRPKHDGGQAHFYSVVSRDTLDAEYAAHRQRFLAEQGYAYRI
TDADDLLGPQIG
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
gtggccgacggaccgctcatcgtccagtccgacaagaccgtgctcctcgaggtcgatcac
gaccgggcgaacgaggcgcggcaggcgatcgcaccgttcgccgagctcgaacgcgccccc
gagcacatccacacctaccgggtgacgccgctggcattgtggaacgcccgtgccgccggt
cacgacgccgagcaggtcgtcgacgcgctggtctcgcattcccggttcgccgtcccgcag
gcgctgctcgtcgacatcgtcgacaccatgagccgttacgggcgcctccagctggtcaag
aaccccgcccacggcctgaccctggtcagcctcgaccgggcggtgctcgccgaggtcctg
agaaacaagaagatcgccccgatgctcggtgcgcgcatcgacgacgacaccgtgatcgtg
catccgagcgagcgcggacgcgtcaagcagatgctgctgaagatcggctggccggccgag
gacctcgcggggtacgtcgacggcgaggcccattcgatctcgctggacttcgagacgaac
ccctggcacctgcgcgactaccaggaactggccgccgactcgttctggtcgggcggctcg
ggtgtcgtggtgctgccgtgcggcgccggtaagacgatggtcggcgcggccgcgatggcg
aaggccggcgcgacgacgctcatcctcgtgacgaacacggtcgccgggcgccagtggaag
cgcgagctgatcgcccgtacctccctcaccgaggacgagatcggcgagtactcgggcgag
aagaaggagatccgcccggtcaccatcgccacctaccaggtgatcacccgcaagtcgaag
ggtgaataccgcaatctcgagttgttcgactcccgcgactgggggctgatgatctacgac
gaggtgcacctgctgccggcgccggtcttccgtatgaccgcagacctgcagtcccgccgc
cgcctcggtctcaccgcgaccctcgtgcgcgaggacggacgcgaaggcgacgtcttctcg
ctcatcggcccgaagcggttcgacgcgccgtggaaggacatcgaagcccagggctggatc
gcccccgccgactgcgtggaggtccgcgtgaccctcaccgacgccgagcgcatggcgtac
gcggtcgccgagcccgaggaacggtacaagctgtgctcgaccgcgcgcaccaagatcccg
gtcgtgaagtcgatcctcgagcagcaccaggacgccccgacactgatcatcggtgcctac
atcgatcagctcgacgagctcggtgaagcgctcgacgccccggtcatcaagggttcgacg
aagacgaaggaacgcgaggcgctgttcgaccggttccggtcgggcgagctgaaggtgctc
gtcgtgtcgaaggtcgcgaacttctccatcgacctgccggaggcctcggtcgcgatccag
gtgtcgggcaccttcggttcgcgtcaggaggaggcccagcgtctcgggcggctgctgcgt
ccgaagcacgacggcgggcaggcccacttctactccgtggtctcgcgcgacaccctcgac
gccgaatacgccgcgcatcgccagcggttcctcgccgagcagggttacgcgtaccggatc
accgacgccgacgacctgctcggacctcagatcggctga
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