Rhodococcus pyridinivorans SB3094: Y013_21130
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Entry
Y013_21130 CDS
T02974
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rpy
Rhodococcus pyridinivorans SB3094
Pathway
rpy03420
Nucleotide excision repair
rpy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Y013_21130
03430 Mismatch repair
Y013_21130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpy03400
]
Y013_21130
Enzymes [BR:
rpy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Y013_21130
DNA repair and recombination proteins [BR:
rpy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Y013_21130
MMR (mismatch excision repair)
Other MMR factors
Y013_21130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
OstA_2
DEAD
AAA_22
ResIII
Serine_rich
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AHD22954
UniProt:
V9XLN3
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All DBs
Position
4487279..4489657
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AA seq
792 aa
AA seq
DB search
MNTPVALANSRPGSDALLEGLNPQQREAVTHEGAPLLIVAGAGSGKTAVLTRRIAYLLAE
RGVVPGQVLAITFTNKAAAEMRERVAALVGPRANAMWVSTFHSSCVRILRAQAGLLQGMN
SNFTIYDADDSRRLLTMIAKDLELDSKKYSARLLSTQISNLKNELIGPEEAAHEAETDSA
ATELTRVVARVYAHYQQRLRTANAFDFDDLIGETVALLQAHPQVAEYYRRRFRHVLVDEY
QDTNHAQYVLVRTLVGDPEEESAVPPSELCVVGDADQSIYAFRGATIRNIEEFERDYPQA
RTILLEQNYRSTQNILSAANSVISKNTGRREKRLWTDSGEGELITGYVADNEHDEARFVA
AEIDRLVDGGDTTYSDIAVFYRTNNASRAFEDVFIRHGVPYKVVGGVRFYERKEVRDVVA
YLKVLDNPDDTVSLRRILNTPRRGIGDRAEACVAVHAERLGVSFGQALADAAAGKVALLN
TRAQKAIAGFVEMMDGLRAMLVASDADGNDMVDIGDVVEAILDRTGYSAELSASDDPQDG
ARLDNLHELVSVAREFSADVRNAAGIVDDEREEGDPEPGSLAAFLEKVSLVADADQIPEN
EAGVVTLMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDPAELSEERRLAYVGITRARRR
LYLTRAVLRSSWGQPLTNPESRFLQEIPQHLIDWRRLEPTPARGQAIGSGTGSRFGAGER
RGSSGTPSFGAARGRNNHLVLDVGDRVSHDKYGLGTVLETRGSGPTATVVIDFGSAGKVR
LMLVGGVPMIKL
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgaacactcccgtcgcgctcgcaaactcccgccccggatccgatgctcttctcgaaggg
ctcaatccgcagcagcgggaagcggtcacgcacgaaggagccccgctgctgatcgtcgcg
ggcgcgggctccggcaagactgcggtgctcacgcgtcgcatcgcctatctgctggccgag
cgcggcgtcgtccctggtcaggtgctcgccatcacgttcaccaacaaggccgccgccgag
atgcgcgagcgggtggcggctctggtggggccgcgcgcgaatgcgatgtgggtctcgacc
ttccactcgagctgcgtccggatcctgcgcgcgcaggcgggtctgctgcagggcatgaat
tcgaatttcacgatctacgacgccgacgattcccgtcgtctgctcacgatgatcgcgaag
gatctcgaactcgacagcaagaagtactccgcccggctgctgtccacacagatctcgaac
ctgaagaacgaactgatcgggccggaagaagccgcccacgaggcggagaccgattcggcg
gccaccgaactcacccgcgtcgtcgctcgggtctacgcgcactaccagcagcgcctgcgc
acggcgaacgccttcgacttcgacgacctcatcggcgagacggtggcgctgctgcaggct
catccgcaggtcgccgagtactaccggcgccggttccgtcacgtcctggtcgacgagtac
caggacaccaaccacgcgcagtacgtgctggtgcgcaccctcgtgggcgatccggaggag
gaatccgccgtccccccgagcgaactgtgcgtggtgggcgacgccgaccagtcgatctac
gccttccgcggcgccacgatccgcaacatcgaggagttcgagcgcgactatccgcaggcg
cgcacgatcctgctcgaacagaattaccgctccacccagaacatcttgtcggcagccaat
tccgtcatctccaagaacacgggtcgccgcgagaagcggctgtggaccgattcgggtgag
ggcgaactcatcaccggctacgtcgccgacaacgagcacgacgaggcgcggttcgtcgcc
gccgagatcgaccggctcgtcgacggcggcgacaccacctactccgacatcgcggtgttc
taccgcaccaacaatgcctcccgcgcgttcgaggacgtcttcatccggcacggtgtgccc
tacaaggtcgtcggcggtgtgcggttctacgagcgcaaggaggtgcgcgacgtcgttgcg
tacctgaaggtgctcgacaaccccgacgacacggtgagcctgcgccgcatcctcaacacc
cctcgccgcggtatcggcgatcgtgccgaggcgtgcgtggcggtgcacgccgagcggctc
ggtgtgagcttcgggcaggccctcgccgacgccgcggccggcaaggtcgcgctgctgaac
acgcgggcgcagaaggcgatcgccggtttcgtcgagatgatggacggcctgcgggcgatg
ctcgtcgcgagcgacgccgacggcaacgacatggtggacatcggcgacgtcgtcgaggcg
atcctcgatcgcaccggatacagcgccgagttgtcggcgagcgacgacccgcaggacggc
gcccgtctcgacaacctccacgaactcgtcagcgtggcaagggaattcagtgccgacgtc
cgtaacgcggccgggattgtcgacgacgaacgtgaagagggggatcccgaaccgggatcg
ctcgcggcgttcctcgagaaggtctcgctcgtcgccgacgccgaccagatcccggagaac
gaggccggtgtggtcacgctgatgacgttgcacaccgcgaagggcctcgagttcccggtt
gtgttcgtcaccggttgggaggacggccagttcccgcacatgcgtgccctcggcgatccg
gccgagctgtccgaggaacggcgactcgcgtatgtcggcatcacgcgcgcccggcgtcgt
ctctacctcacgcgggccgtactgcgttcgtcctgggggcagccgctcaccaatccggaa
tctcgtttcctgcaagagattccgcagcacctcatcgactggcgacgcctcgagcccacg
cccgcccgtggtcaggcgatcggctcgggcaccggttcacggttcggtgcgggcgagcgg
cgcggatcctcgggaacaccgagtttcggtgcggcgcgcggacgcaacaaccacttggtg
ctcgacgtcggcgaccgcgtcagccacgacaagtacggtctcggaacggttctcgaaact
cggggctcgggccccacggccaccgtcgtgatcgacttcggcagtgccggcaaggtgcgg
ttgatgctcgtcggcggtgtgccgatgatcaaactgtga
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