Rhodococcus pyridinivorans SB3094: Y013_22100
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Entry
Y013_22100 CDS
T02974
Name
(GenBank) recombinase RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rpy
Rhodococcus pyridinivorans SB3094
Pathway
rpy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Y013_22100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpy03400
]
Y013_22100
Enzymes [BR:
rpy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Y013_22100
DNA repair and recombination proteins [BR:
rpy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Y013_22100
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
AAA_11
Viral_helicase1
UvrD-helicase
Helicase_RecD
SH3_13
AAA_22
AAA_16
TraI_hel_assoc_N
AAA_24
AAA_28
Motif
Other DBs
NCBI-ProteinID:
AHD23126
UniProt:
V9XI30
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All DBs
Position
4688684..4690561
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AA seq
625 aa
AA seq
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MTDVRIAQRGKGALRQFNEVGALSAADVHVALRLAALGGEDDPHVHLATALAVRAVRSGS
VCLDLTRFREVTVDEDADGHPVVDPASLPWPRDEDVLAALRRSPLVVGGDRGPLRPLRLV
DTAEGPLLYLDRYFRQEQTIRRVLAERTATFPDLDEERIAATLDELFHHPDDPSRPAPAP
DRQRVAAALAATRPTTVIAGGPGTGKTHTVARILALLTRLYGHELRIGLAAPTGKAAARL
QESVREQETELGLPPNLTAMTVHRMLGWQRGRTRFRYHAGNHLPYDVIVVDETSMVSLTM
MCRLLEAVRPDTRLVLVGDPDQLASVDAGAVLADLVGRPVSGTLDPVFERVVARDVAAAD
DPAEAAFTPAQRARLGGGVVRLSRGRRFGGAIAELAVAVRKGAGDEVLDILRRGDPEVSF
VAPSDLDALRDDIVRSAAEVTKSAETGDVETALKRFEEHRLLCAHRDGPAGVQWWARQAA
EWIGEAAGQRLDPESWYPGRPLLVTANDHDMQIYNGDTGVVVRRGDELVAAFARGETPFE
LRPSQLPAVSTVYAMTIHRSQGSQYGTVSVVLPDSGSALLTRELLYTAITRARSHVRIIG
TEDAVRAGVARQVLRASGLRREIRV
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgttcggatcgcccagcgcggcaagggcgctctgcggcagttcaacgaggtg
ggcgcactctccgccgccgacgtgcacgtcgccctgcgactcgcggcgctcggcggcgag
gacgacccgcacgtgcatctcgccaccgcgctggcagtgcgtgccgtgcgatccgggtcg
gtgtgcctcgacctcacccgtttccgcgaggtcacggtcgacgaggacgcggatggccat
cccgtcgtcgaccccgcgagcctgccgtggcctcgcgacgaggacgtgctcgcggcgctg
cgtcgcagccccctcgtggtcggtggcgaccgcggacctctgcgtccgctgcgtctcgtc
gataccgcggaaggtccgctgctgtatctcgaccggtacttccggcaggagcagacgatc
cgccgggtgctcgccgagcgcacggcgacgttccccgacctcgacgaggagcgcatcgcg
gcgacactcgacgagctgttccaccatcccgacgatccctcccggcccgcgccggcaccc
gatcgtcagcgcgtcgcggcggcactcgccgccacccgaccgaccacggtgatcgcgggc
gggccgggcaccggcaagacccacaccgtggcgcggatcctcgcgctgctcacccgcctg
tacggacacgaactgcgcatcggcctggccgctcccaccggcaaggccgctgcgcgcctc
caggaatcggtgcgcgagcaggagaccgagctgggtctgccgccgaatctcaccgccatg
accgtgcaccggatgctcggctggcagcgcggccgcacccgcttccgctaccacgcgggc
aaccacctgccgtacgacgtgatcgtcgtcgacgagacgtcgatggtgtcgctgacgatg
atgtgccgcctgctcgaggcggtgcggcccgacacccggctcgtcctcgtgggcgacccc
gaccagctcgcctcggtcgacgccggtgcggtgcttgccgacctcgtggggcgcccggtc
agcggcaccctcgatccggtcttcgaacgggtcgtcgcccgcgatgtggcggccgccgac
gaccccgccgaggcggccttcactccggcccaacgcgcccggctcggtggcggtgtcgtg
cggctgagtcgcggccgccgcttcggtggtgcgatcgccgagctggcggtggccgtccgt
aagggcgccggcgacgaggtgctcgacatcctgcgcaggggcgacccggaggtctcgttc
gtggccccctccgacctcgacgccctacgcgacgacatcgtccgctccgccgccgaggtc
accaagtccgccgagacgggggacgtcgagacggcgctgaagcggttcgaggaacatcgg
ttgctgtgcgcgcaccgcgacggcccggccggcgtgcagtggtgggcgcggcaggccgcc
gagtggatcggggaggccgcggggcagcgactcgatcccgagagctggtatccgggccgg
ccgttgctcgtcaccgcgaacgaccatgacatgcagatctacaacggcgacaccggcgtg
gtcgtgcggcgcggcgacgaactcgtcgcggcgttcgcacgcggcgagacgccgttcgaa
ctgcgcccgagtcagctcccggcggtgagcaccgtctacgcgatgacgatccaccgcagc
cagggcagtcagtacggcaccgtctcggtggtgctgcccgattccggatcggcgctgctt
acccgcgaactgctgtacaccgcgatcacgcgtgcgcggtcgcacgtgcggatcatcggg
accgaggatgcggtacgcgcgggcgtggcacggcaggtgctccgagcgagtgggctgcgg
cgggagatccgcgtgtag
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