Rhodococcus pyridinivorans SB3094: Y013_23205
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Entry
Y013_23205 CDS
T02974
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rpy
Rhodococcus pyridinivorans SB3094
Pathway
rpy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Y013_23205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpy03019
]
Y013_23205
03009 Ribosome biogenesis [BR:
rpy03009
]
Y013_23205
Enzymes [BR:
rpy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Y013_23205
Messenger RNA biogenesis [BR:
rpy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Y013_23205
Ribosome biogenesis [BR:
rpy03009
]
Prokaryotic type
rRNA helicases
Y013_23205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
UvrA_inter
HEM4
CMS1
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AHD23313
UniProt:
V9XLR7
LinkDB
All DBs
Position
4914641..4916521
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AA seq
626 aa
AA seq
DB search
MSDIQDAPDQETAALTFADLDIDARVLQALSDVGYESPSPIQAATIPPLLEGRDVVGLAQ
TGTGKTAAFAVPILSRIDTSVKRPQALVLAPTRELALQVAEAFGKYSVHIPGLSVLPIYG
GQAYGVQLSGLRRGAQVIVGTPGRVIDHLAKGTLDISELEFLVLDEADEMLTMGFQEDVE
RILADTPDTKQVALFSATMPGAIRRLSKQYLKDPQEITVKSKTTTSANISQRWVLVSHQR
KLDALTRILEVETFEAMIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTINQL
KNGTLDILVATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRTGDALLFVAP
RERHLLKAIERATRQPLAEMQLPTVEDVNAQRVSKFNDSITEALASDHLQLFRTFIEDYE
REHDVPLADIAAALAVLSRDGESFLMEAEPEPVAPPRREREPRERPPRRFDDGPKVGRDG
QEMTTYRIAVGKRHRVQPGAIVGAIANEGGLRRGDFGHISIRADHSLVELPKDLSPQTLD
ALRSTRISGVLIQLQPDSGAPSGRPSSYRGRDDRRGDDRRGGDRRDHGKRDRGGKREYGD
SRGGRSGDFTHRSDRNDRGGRGGYRD
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatattcaagacgcccccgaccaggagaccgcagctctcacgtttgccgatctc
gacatcgatgcacgtgtgctgcaagctctttcggatgtgggttacgagtccccgtcgccg
atccaggcggcgaccatcccaccgctgctggagggacgggacgtcgtcggtctcgctcag
accggcaccggcaagaccgccgccttcgcggtgccgatcctctcgcgtatcgacacctcc
gtgaagcggccccaggcgctggtgctggcgcccacccgcgagctcgcgctgcaggtcgcg
gaggctttcggtaagtattccgtccatatcccgggcctgtccgtcctgcccatctacggc
ggtcaggcatacggtgtacagctgtccggtctccgccgcggcgcccaggtcatcgtcggc
acccccggacgtgtgatcgatcacctcgccaagggcaccctcgacatctccgaactcgag
ttcctcgtcctcgacgaggccgacgagatgctcaccatgggcttccaggaggacgtcgag
cgcatcctcgccgacacccccgacaccaagcaggtcgcgctgttctccgcgaccatgccg
ggcgcgatccgccggctgtcgaagcagtacctgaaggatccgcaggagatcaccgtcaag
tcgaagacgacgacgtcggcgaacatctcccagcgctgggttctcgtctcccatcagcgc
aagctcgacgcgctgacccgaatcctcgaggtcgagaccttcgaggccatgatcatcttc
gtgcgcacgaagcaggccaccgaggacctggccgagcgcctgcgcgcccgcggtttctcc
gccgccgccatcaacggcgacatcgtgcaggcccagcgcgagcgcacgatcaaccagctc
aagaacggcacgctcgacatcctcgtcgccaccgacgtcgccgcgcgtggtctcgacgtc
gagcgcatcagccacgtcgtcaactacgacatccctcacgacaccgagtcgtacgtgcac
cgcatcggccgcacaggccgcgccggccgcaccggcgacgcgctgctgttcgtcgctccg
cgcgagcgtcacctgctcaaggcgatcgagcgggccacccgccagccgctcgccgagatg
cagctgcccaccgtcgaggacgtcaacgcccagcgcgtatcgaagttcaacgactcgatc
accgaggcgctcgcctccgatcacctgcagctgttccgcaccttcatcgaggactacgag
cgtgagcacgacgtgccgctcgccgacatcgcggccgcgctggcggtgctgtctcgcgac
ggcgagtcgttcctcatggaggccgaacccgagccggtcgcaccgccgcgccgcgagcgc
gaaccgcgcgagcgtccgccgcgtcgcttcgacgacgggccgaaggtcggtcgcgacggc
caggagatgaccacctaccgcatcgccgtaggcaagcgtcaccgcgtgcagcccggtgcg
atcgtcggtgccatcgccaacgagggcggactgcgccgcggcgatttcgggcacatcagc
atccgtgccgatcacagcctcgtcgagctgccgaaggatctgtcgccgcagaccctcgac
gcgctgcgctccacccgcatctcgggcgtgctcatccagctgcagcccgactccggcgca
ccgtccggacgtcccagctcgtatcgcggacgcgacgaccgtcgcggcgacgatcgacgc
gggggagaccgtcgcgatcacggcaagcgcgatcgtggcggcaagcgcgagtacggcgac
agccgtggtggccgctccggcgacttcacacaccgcagcgaccgcaacgaccgtgggggt
cgcggcggttaccgcgactga
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