Rhodococcus qingshengii: C1M55_04260
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Entry
C1M55_04260 CDS
T05315
Name
(GenBank) AAA family ATPase
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
rqi
Rhodococcus qingshengii
Pathway
rqi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rqi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
C1M55_04260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rqi03400
]
C1M55_04260
Enzymes [BR:
rqi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
C1M55_04260
DNA repair and recombination proteins [BR:
rqi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
C1M55_04260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PDDEXK_1
AAA_25
ResIII
Motif
Other DBs
NCBI-ProteinID:
AUS30398
LinkDB
All DBs
Position
1:912363..915680
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AA seq
1105 aa
AA seq
DB search
MDFDLLGPLPTGTTVLEASAGTGKTYAIVGLATRCVAEGLADISQVLLVTFSRAATQELR
ERARERFAGVSAALVDPEEARRSDDDLVAYLATADDEEIGVRRRRLLRALAEFDAGTITT
THSFCQRMLDGLGIAGEREPDTTFVESVDDLISEVVSDLYLSRYSRTDSSPPFSTKDALA
IARSAVGDGQAILEPDGEEETAPGQRVLFAAAARVEVERRKRTKGIRDFNDLLTLLHGVL
TDPEYGPVACRRVREKFKVVLIDEFQDTDPLQWDILRLAFHGHTTLVLVGDPKQAIYAFR
GAEVLSYLDAVDQADAHQELTTNWRSDPGLLAALEHLYGGAALGNEGIVAHPVEASHKKS
RLFGPVPMRVRHLPRTGAGPLNRSGFPAVGRLRSRVADDVAADVVALLGGDARLAVDGVP
RPVEPGDVAVLVRTHKHVAMIRDALDAVGVPSVLTGGSSVFATPSATQWLWLLQAIEQPH
RSDRVRLTALSPIFGRTAQELDKDGDNIVAELAGQLRSYSGLFARVGFAAVFERISAETN
LEKRVLAAPSGERDFTDLRHVAQLLGRVATEEAFGLSALVRWLSDRIKDPTSGSATDRSR
RLDSDAAAVQIATVHATKGLEFPIVYVPFSWESVGGFNSPTQLLHDPEGRRILDVGGQEG
PGYNARKTVAEAEEAGEELRLLYVALTRAQCQLVLWWAPSYGTSRSPLHRLMLGRTPGIA
EPARVVKVLDDGTTAARLATWPAAASDVISVEPVGPHPPSPVHWSRAAADVTELAAARFD
RDLDTLWRRTSYSALTAGAHHAVTTTGSEVEDPEKDDEPEDSVDLESITPSPLEAFPSPM
NGLPAGAAFGTLVHEVLEVVDTAVADLRAELGMRCAEAVSVRAAEVDSEALADALYLVMQ
TPLGFGTLATIAPKDRLPELDFELPLAGGDDPVSMSVTLRGVSELLRRHLSSDDILASYA
DYLDRVETSPMRGFLTGSIDAVLRIPGPSFVIVDYKTNRIGRGDLTAASYTRELMATEMM
RSHYPLQALLYSVALHRYLRWRLPDYDPHRHLGGVQYQFVRGMLGPDSPPECGVFEWKPP
AQLTVELSDLLAGLDASHTVGEKIR
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
gtggacttcgatctattggggccactgcctaccggcaccacggtgttggaagcgagcgcc
ggaactggcaagacctacgcgatcgtcggactcgcgacccgttgtgttgccgaaggtctc
gccgacatttcgcaagttctgctggtgacattcagccgggccgccactcaggaacttcgt
gagcgtgccagggagaggttcgcgggagtgtccgccgctctggtcgacccggaggaggcg
aggcggtcggatgatgatctggtggcgtacctcgccacagctgacgacgaggagatcggc
gtgcggcgtcgtcgactcctgcgcgctctcgcggagttcgacgccggcaccatcacgacc
acccacagtttctgtcagaggatgctcgacggactcggcatcgccggggaacgcgaaccg
gacacaacttttgtggagtcggtcgacgacctgatcagtgaggtcgtctcggatttgtac
ctcagccgctacagccggacggactcgtctccaccgttctccacgaaggacgcgctggcc
atcgcccgaagtgcagtcggcgatggtcaggcaattctcgaacccgacggcgaggaggag
accgcacccggtcagcgcgttctcttcgcggctgctgctcgtgtcgaggtcgaacgacgt
aagcggaccaaaggaattcgcgacttcaacgatctgctgacgctgttgcacggcgtattg
accgatccggaatacggtcccgtcgcgtgtcgtcgggtgcgcgagaagttcaaggtcgtg
ttgatcgacgagttccaggacaccgatccgttgcagtgggacattctgcgtttggccttc
cacggtcacaccaccctggtcctggtcggtgatcccaaacaagccatctatgcgttccgc
ggggcagaagttctgagttatctcgatgcggtcgatcaggcggatgcgcaccaggagttg
accaccaattggcgtagcgacccagggttgttggcggcactcgaacacctctacggtggt
gccgcactcggcaacgaaggcatcgtcgcgcatccggtggaggcttcgcacaaaaagtct
cggttgttcggcccggtgccgatgcgtgtacgccatctgccccgtaccggagccggaccg
ctcaatcgttcgggatttccggccgtaggcagacttcgcagtcgcgtcgcggacgacgtc
gcagcagacgtggtcgcgctcctgggcggcgatgcccgcttggcagtcgacggtgttcca
cgcccggtcgaaccgggagacgtcgcggtgttggtgcgcacccacaagcacgtggcgatg
atccgcgatgctctcgatgccgtcggtgtaccttccgttttgaccggagggtccagtgtt
ttcgcgacacccagtgcgacccagtggctgtggctgttgcaggcgatcgagcagccccat
cgctccgatcgtgtccggttgacggccctctcaccaattttcgggcgcaccgcccaagaa
ctggacaaggatggcgacaacatcgtcgcggaacttgccggtcaactgcgctcctattcc
gggctgttcgcacgcgtcgggtttgcggctgtgttcgaaagaatctctgccgaaacaaat
ctggagaagcgtgtactcgcggccccgtccggcgaacgagatttcaccgatctgcggcac
gtcgcacaactcctcggtcgcgtcgcgaccgaggaagcgttcgggttgagcgcactggtt
cgctggctttccgaccggatcaaggatccgacgtccgggagcgcgaccgacagaagccgt
cgcctcgacagtgacgctgccgcagtgcaaatcgctacggtgcatgccaccaaagggctc
gagttcccgatcgtctacgtcccgttcagttgggagagcgttggcggcttcaactcgccg
acgcagctgttgcacgacccggagggacgccgcatcctcgacgtcggcgggcaggaaggc
ccggggtacaacgccagaaagactgttgcggaggccgaagaagcgggcgaagaactgcgg
ctgctgtacgtggcgctgacccgggcgcagtgccaactcgtgctctggtgggcacccagc
tacgggacctcccgctcgccgctgcaccggttgatgctcggacgtacacccggcatcgcc
gaacctgctcgggtagtgaaggtgctcgacgacggtacaaccgcagcacggctcgcaacc
tggccggcagcagcgtccgacgtgatctcggtggaacctgttggtccccatccgccctcg
cccgtccactggtccagagcggctgcggacgtgaccgaactggccgcggcgcgtttcgat
cgagacctggacactctgtggcgtcgtacgtcgtactcggcactcaccgccggagcgcac
cacgcggtcacgaccacgggcagtgaggtcgaggatcccgaaaaagacgacgagccagag
gattccgtagacctcgagagcattaccccctcgcccctggaggcgttcccttcacccatg
aacggacttcccgcgggcgccgcattcggcacgctggtgcatgaggtgctcgaggtggtg
gacacggctgtggcagatctgagagcggaactcgggatgcgttgcgccgaggcggtctcg
gtacgggcggccgaggtcgactccgaagcactcgcggatgcgctgtatctggtgatgcag
actcccttgggattcggaaccttggccacgatcgcgccgaaagatcgtcttcccgaactc
gatttcgaactcccactggccggtggcgacgatccggtgtcgatgagtgtcacactccgc
ggagtatcggaactgttgaggcgccacctttcctccgacgacattctggcgtcgtacgcc
gactatctggaccgtgtcgagacgtcaccgatgcgcggattcctgacgggcagtatcgac
gcagtcttgcggatcccgggcccgtcgttcgtgatcgtcgattacaagaccaaccggatc
ggtcgcggcgatctgacggctgccagctacacgcgtgaactcatggcgacggagatgatg
cgctcgcactatccgctgcaggcactgctgtattcggttgcactgcatcggtatctgcgg
tggcgcctgcccgactacgatccgcaccgtcatctcgggggcgtgcagtatcaattcgtg
cgtgggatgctcggcccggacagcccgccggaatgcggtgtcttcgaatggaaaccgcct
gctcagctgacggttgaactatcggatctgctggccggtcttgatgcgtcccacacagta
ggggagaagattcgatga
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