Rhodococcus qingshengii: C1M55_08780
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Entry
C1M55_08780 CDS
T05315
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rqi
Rhodococcus qingshengii
Pathway
rqi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rqi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C1M55_08780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rqi03021
]
C1M55_08780
03400 DNA repair and recombination proteins [BR:
rqi03400
]
C1M55_08780
Enzymes [BR:
rqi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C1M55_08780
Transcription machinery [BR:
rqi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C1M55_08780
DNA repair and recombination proteins [BR:
rqi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C1M55_08780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AUS31197
LinkDB
All DBs
Position
1:1859213..1863169
Genome browser
AA seq
1318 aa
AA seq
DB search
MLDVNFFDELRIGLASAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVIVGVDEELRHNELSTLEAEMQVEKKTVADQRDADLEARAQKLEAD
IAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLSVKQLIIDELL
YRELVDRYGEYFTGAMGAESIQILMQNFDLDAEAESLRETIRSGKGQKKLRALKRLKVVA
AFQTNGNSPMGMVLNAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERKR
VQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFHLTRLDEGVTGELV
APTNDEAEQGVYSSPAEAQMAVDRGALSVQAQIKVRLTQQRPPRDLENELFPEGWNYGEG
WTATTTLGRVLFNELLPADYPFVNEQMPKKRQATIINDLAERYPMIVVAQTVDKLKDVGF
YWATRSGVTVSISDVLVPPEKPAIIEDFEAQADKIEKQYQRGALDKKERNSALVTIWQEA
TDKVGKAMEAHFPDSNPIPMIVKSGAAGNMTQVRSLAGMKGLVTNPKGEFIPRPIKSSFK
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGIVTTI
AEKQADGTMIRDAHVETSTYARTLAADAVDANGTVIVERGHDLGDPAIDALLEAGITTVK
VRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVA
GDDITGGLPRVQELFEARVPKGKAPIADVTGRVQLEDGDRFYKITIVPDDGGEDVVYDKL
SKRQRLRVFKHADGRESLLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQIHLVNEVQE
VYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESANRRVVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIPA
GTGINRYRNIQVQPTEEARAAAYAVPSYDDQYYSPDGFGQNTGAAVPLDDYGFSNDYR
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaactccgcattggcttggccagtgcagaggacatc
cgcaattggtcctacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggccccactcgggactgggagtgc
tactgcggtaagtacaagcgtgtccgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtcactcgcgccaaggttcgtcgtgagcgcatgggtcacatcgaactggccgcaccg
gtcacgcacatctggtacttcaagggtgttccgagccgtctcggttacctgctcgacctg
gctccgaaggatctcgaaaagatcatctacttcgctgcctacgtcatcgtcggtgtcgac
gaggagctccgtcacaacgagctgtccaccctcgaagccgagatgcaggtcgaaaagaag
accgtcgcagatcagcgcgacgccgatctcgaggcacgtgcgcagaagctcgaagccgac
atcgccgagctcgaggcagagggcgcgaagtccgatgtccgccgcaaggtcaaggacggc
ggcgagcgcgaaatgcgtcagctccgtgaccgcgcgcagcgtgagctggatcgtctcgac
gagatctggaccaccttcaccaagctgagcgtcaagcagctcatcatcgacgagctcctg
taccgcgagctggtcgaccgttacggcgagtacttcacgggtgcgatgggcgcagagtcc
atccagatcctgatgcagaacttcgacctcgacgccgaggcagagtctctccgcgagacc
atccgcagcggcaagggccagaagaagctgcgtgcactcaagcgcctcaaggtggttgcg
gcattccagaccaacggcaactcgccgatgggcatggtcctcaacgctgttccggtgatc
ccgccggagcttcgcccgatggttcagctcgacggtggacgtttcgcgacgtccgacctc
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggtgctcccgagatcatcgtcaacaatgagaagcggatgctgcaggagtcggtcgacgcc
ctgttcgacaacggtcgtcgtggacgtccggtcaccggaccgggtaaccgcccgctgaag
tccctgagcgatctgctcaagggcaagcagggtcgcttccgtcagaacctgctcggcaag
cgcgtcgactactcgggtcgttccgtcatcgtcgtcggtcctcagctcaagctgcaccag
tgtggtctgcccaagctgatggctctcgagctgttcaagccgttcgtgatgaagcgtctg
gtcgatctgaaccacgcgcagaacatcaagtcggcaaagcgcatggtcgagcgcaagcgc
gtccaggtgtgggacgtcctcgaagaggtcatcgccgagcaccccgtgctgctcaaccgt
gcacctacgctgcaccgtctgggtatccaggcattcgagccgcagctcgtcgagggcaag
gccattcagctccacccgctggtgtgtgaggccttcaacgccgacttcgacggtgaccag
atggctgttcacctcccgctgtcggcagaggctcaggccgaggcacgcatcctgatgctg
tcctcgaacaacatcctctcgcctgcttcgggtcgcccgctcgccatgccgcgtctggac
atggtcacgggtctgttccacctgacccgtctcgacgagggcgtcaccggcgagctcgtt
gctccgaccaacgacgaggcagagcagggcgtgtactcctcgcccgccgaggctcagatg
gcagtcgaccgcggcgcgctctcggttcaggctcagatcaaggtgcgtctgacgcagcag
cgtccgccgcgcgacctcgagaacgaactgttccccgagggctggaactacggtgaaggc
tggaccgccaccacgacactcggccgtgtgctcttcaacgagctgcttccggcggactac
ccgttcgtcaacgagcagatgccgaagaagcgccaggcgacgatcatcaacgatctcgcc
gagcggtacccgatgatcgtggttgctcagaccgtcgacaagctcaaggacgtcgggttc
tactgggccacccgttcgggtgtcacggtctcgatctccgacgtgctcgtgccgccggag
aagcctgccatcatcgaggacttcgaggctcaggccgacaagatcgagaagcagtaccag
cgtggtgctctggacaagaaggagcgcaacagcgctctggtcaccatttggcaggaagcg
accgacaaggtcggcaaggccatggaggctcacttccccgacagcaacccgatcccgatg
atcgtgaagtccggcgcagccggcaacatgactcaggttcgctcgctcgccggtatgaag
ggcctggtgacaaacccgaagggtgagttcatcccgcgtccgatcaagtcttccttcaag
gaaggcctgaccgttctcgagtacttcatcaacacgcacggtgctcgtaagggtctggcc
gataccgcactccgcactgccgactcgggttacctgacccgtcgtctggtggacgtttcg
caggacgtcatcgtccgcgaggtcgactgtggaacagagcgcggcatcgtcaccacgatc
gccgagaagcaggccgacggcacgatgatccgcgatgctcacgtggagaccagcacgtac
gcccgtaccttggcggccgatgcagtcgacgcgaacggcaccgtcatcgtcgagcgtggc
cacgatctcggtgaccccgcgatcgatgctctgctcgaagccggcatcacgacggtcaag
gtccgctcggtcctgacctgcaccaccggcaccggcgtttgcgccacttgctacggccgc
tcgatggccaccggcaagctggtcgacatcggtgaggctgtcggtatcgtcgccgcacag
tcgatcggtgagcccggtactcagctgaccatgcgtaccttccaccagggtggtgtcgca
ggagatgacatcaccggcggtctgccgcgtgtccaggagctgttcgaggcacgtgtgccc
aagggcaaggctcctatcgcggacgtcaccggtcgggtacagctcgaagacggcgatcgt
ttctacaagatcaccatcgttccggacgacggcggcgaagacgttgtctacgacaagctc
agcaagcgtcagcgtctgcgtgtcttcaagcacgccgacggtcgcgaaagcctcttggct
gacggtgaccacgtcgaggtcggacagcagctcatggaaggtgctgccgatccccacgag
gtcctgcgagtcatgggtccgcgtcaggttcagatccacttggtcaacgaggtccaggag
gtgtaccggagccagggtgtgtcgatccacgacaagcacatcgaggtcatcgtgcgccag
atgcttcgtcgcgtgacgatcatcgattcgggtgccaccgagttcctgcccggttcgctc
accgagcgcgccgagttcgagtcggcaaaccgccgcgttgtcgccgagggtggcgagccc
gcagccggccgtccggtgctcatgggtatcacgaaggcgtcgctcgcgacggattcgtgg
ctgtccgcggcatcgttccaggagaccactcgtgtcttgaccgacgcggctatcaactgc
cgctcggacaagctgatcggtctgaaggaaaatgtcatcatcggcaagctgatccctgcc
ggtaccggtatcaaccgttaccgcaacatccaggttcagcccaccgaagaggcacgcgcc
gctgcttacgcagtgccgtcgtacgacgaccagtactacagcccggacggcttcggccag
aacaccggtgctgcagttccgctggacgactacggcttcagcaacgactaccgctaa
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