Rhodococcus qingshengii: C1M55_11280
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Entry
C1M55_11280 CDS
T05315
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rqi
Rhodococcus qingshengii
Pathway
rqi03420
Nucleotide excision repair
rqi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rqi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C1M55_11280
03430 Mismatch repair
C1M55_11280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rqi03400
]
C1M55_11280
Enzymes [BR:
rqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1M55_11280
DNA repair and recombination proteins [BR:
rqi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C1M55_11280
MMR (mismatch excision repair)
Other MMR factors
C1M55_11280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
NNH1
TPM_phosphatase
Motif
Other DBs
NCBI-ProteinID:
AUS31634
LinkDB
All DBs
Position
1:2435187..2438579
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AA seq
1130 aa
AA seq
DB search
MAAATQKARRPKIDPVDLAVALGQHPPTPEQAAVIAAPLGPTLVVAGAGAGKTETMAARV
VWLVANGFVDPEAVLGLTFTRKAAQQLTSRIRKRLARLAGSDVLRALDPTGGVRSRILAG
EPEVSTYHAYAGRLLSEHGLLLPIEPSATLLSETELWQVAHRVVSGWDSDLDTDKNPGSI
TETVLALAGQLAEHLVDPEQLLEAHTELDKLIHTLPAGPKQRGGPSKELLNYLDVQHKRI
ELLPLVARLGETLRREGALDFGSQMSLSARVASEHPEVGQTERERFRVVLLDEYQDTGHA
QRVLLSSLFGGGADGRLALTAVGDPMQSIYGWRGASAANLPRFATDFPLANGKPAPTLEL
LTSWRNPPEALELANLSSAPLRRRGVAVSTLRARPGAVAGDVRLALLGDVEQERQWVAEK
IAEEYEAARAEDRPTPTAAVLIRRNADAAPLAEALRSKGLPVEVVGLGGLLHTPEVADVI
AMLRVVADPLAGSAAVRLLTGARWQIGAKDLAALSQRSRELAISAGYGTAGAVTDAEALT
SAVQDALPGENAEQAGLVDSISDPGPAERYSALGYTRINAIAAELASLRERIGQPLTELV
AEVERVLGIGIEAGARTRVGVVGTAGREHLDAFADVVANYATRPTANLPGMLAFFAAAEQ
IEKGLTPGEVEVAPDRVQILTVHSAKGLEWEVVAIPHVSDGVFPSSTASGSWLGALAELP
PSLRGDRAVDADSADGVPVLDLEELYNRKDLENAITAHKKALSNRRLDEDRRLFYVALTR
TERALFISAHHWAESGSEPKGPSEFLDELHQMVTAENDAGEEDSRGAIGVVEEWAPAPEP
DTENPLASTPRTAQWPPDPLGARRGAVEAGAASVLSALASLPQDSEETEEPEDDPENWAS
DVDVLLAEREARANARAEVILPAQLSVTQLVDLKADPDELAARLRRPLPYPPNPLARRGT
AFHAWIERRFGATRLLDLDELPGAADTGAGPETDLVKLQDAFLRSPWANRSPIEVEVPFE
TSIAGTVLRGRIDAVFADPDGGWTVIDWKTGAEPSAANEDAVVMQLAAYRVAWAELMSAR
ARSAGRNEQFPADKVRAAFHYVRSGRTIAPENLPDGEALARLIRTAGAQD
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
gtggctgccgcgacgcagaaggcacgccgaccgaagatcgatcctgtcgacctggcggtc
gcgctcggtcaacacccgccgacgccggaacaggcggctgtcatcgccgcaccgctcggt
ccgacattggtcgtcgccggtgccggtgccggtaagaccgagacgatggctgctcgcgtc
gtgtggctggtggccaacggcttcgtcgatcccgaggccgttctcggattgaccttcacg
cgcaaagcggcacaacagctcacgtcgcgaatccgcaagcgcttggcgcgactggcgggt
tcggacgttctgcgggcactcgacccgaccggcggagtgcgttcccggattctggccggg
gaacccgaagtcagtacctaccatgcttacgcgggacggttgctgtccgagcacggactg
ctgttgccgatcgaaccctcggcgacgctgttgtccgagaccgaactgtggcaggttgcg
caccgcgtcgtgagcggctgggacagtgatctggacaccgacaagaatccggggtccatc
accgaaaccgttctggcccttgccggtcagttggcggagcacctggtcgaccccgagcag
ttgctcgaggctcacaccgagttggacaagctgattcacactctgcccgccggtccgaaa
cagcggggtgggccgagcaaagagctgttgaattaccttgatgtgcaacacaaacgcatc
gagctactgcccctcgttgcccggctgggtgagacgctgcggcgtgaaggcgcattggat
ttcggcagccagatgtcgctgtcggcccgtgtcgcctccgaacatcccgaggtcgggcaa
accgagcgtgagcgctttcgggtagttctgctcgacgagtaccaggacaccggtcacgct
cagcgagtgttgttgtcctcgttgttcggcgggggagccgacggccggttggcgctgaca
gccgtcggcgatccgatgcagtcgatctacggttggcgaggcgcgtcggcggccaacctg
ccacggtttgcaaccgacttcccgcttgccaacggaaagccggctccgacgctcgaactg
ctcaccagttggcgtaacccgccggaggctctcgaactggcaaacctgtcgtcggcaccg
ttgcgccgacgcggtgtggccgtcagcacacttcgtgcgcggccgggagccgtcgccgga
gacgttcgactggcgctgctcggagacgtcgaacaggaacgtcagtgggttgcggagaag
atcgccgaagaatatgaggcggcacgtgccgaagaccgcccgacgcccacggcagcggtg
ttgatccgccgcaacgccgatgctgccccgctggccgaggctttgcggtccaaaggtctg
cccgtcgaagtggtcggactcggtgggctcctgcacacacccgaggtggcggacgtgatc
gccatgctccgagtggtcgccgatccgctggcgggcagcgccgccgttcggctgctcacc
ggagcgagatggcagatcggcgcgaaggacctcgccgcactctcgcaacgctcccgcgaa
cttgccatctccgccggatacggaacagcgggtgcggtcacggacgccgaggcgctcacc
tcggcagttcaggacgcgctgccgggggagaacgccgagcaagcaggattggtcgattcg
atctccgatccaggcccggcagaacgttattcagctctcgggtacacacgcatcaacgcg
atagcggcagagttggcgtcgttgcgcgaacgtatcggccagccgctcaccgaactggtg
gcggaggtcgagcgggtgctcggtatcggaatcgaggcaggcgcgcgaacccgagtcggt
gtcgtcgggaccgcgggccgcgagcatctcgacgcatttgccgacgtcgtcgccaattac
gcgacgcgtccaacagccaatctgcccgggatgctcgcattcttcgcggccgccgaacag
atcgaaaagggcctcactccgggcgaagtggaggtggcgccggatcgcgtgcagatcttg
accgtgcactcggcgaaggggctcgaatgggaagtagtggcgatcccgcatgtcagcgac
ggggtgttcccctcgtccaccgcgtccggatcgtggctcggggcgctcgccgaactgcca
ccgtccttgcgtggtgaccgggcggtcgacgctgattcggccgacggagttccggtgctc
gacctcgaggagctctacaaccgcaaggacctcgagaacgcgatcacggcgcacaagaag
gccttgtccaaccgtcgactggacgaggaccggcgactgttctacgtcgcgctgaccaga
accgaacgggcgctgttcatctcggcgcatcactgggcggagtccggttcggaaccgaag
gggccttcggagttcctggacgagctgcatcagatggtcacggccgaaaacgatgccggt
gaagaagactcacgcggtgcgatcggcgtcgtggaggaatgggcgcctgcaccggaaccc
gacaccgagaacccgttggcctccacaccccgtactgcgcagtggccgcccgacccgctg
ggtgcgcgtcgcggcgcggtcgaggccggagccgcgagcgtcctgtccgcacttgcatcg
ctgccgcaagacagcgaagagacggaagaaccggaggacgatccggagaactgggcctcg
gacgtcgacgttctactggccgagcgcgaagcccgggcaaacgcgcgtgccgaagtgatt
ctcccggcgcagctttcggtgactcagctcgtcgacctcaaggcagatccggatgaactc
gcggcacggctgcgtagaccactgccgtacccacctaacccgctcgcgcggcgcggcacg
gcttttcacgcctggatcgagcgaaggttcggtgcgacccgactgttggatctcgacgaa
ctacccggcgccgcggataccggcgcgggtcccgagaccgatctggtgaaacttcaggat
gcgttcctgcggtccccgtgggccaatcgcagcccgatcgaagtggaagttcctttcgaa
acatccattgccggaacggttttacgcggtcggatcgacgctgtgttcgccgatcccgac
ggcggatggacggtgatcgactggaagaccggtgccgaaccgtcggccgccaacgaggac
gctgttgtgatgcagttggccgcgtatcgggtggcctgggccgaattgatgtcggccaga
gcccgttcggcggggcgcaacgaacagtttccggccgacaaggtgcgggcggcgtttcac
tacgttcgatcgggtcgcaccatcgcacccgagaacctgccggacggtgaggctctcgct
cgcctcatccgaacggcaggcgcgcaagattag
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