Rhodococcus qingshengii: C1M55_11305
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Entry
C1M55_11305 CDS
T05315
Name
(GenBank) ATP-dependent DNA helicase UvrD2
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rqi
Rhodococcus qingshengii
Pathway
rqi03420
Nucleotide excision repair
rqi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rqi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C1M55_11305
03430 Mismatch repair
C1M55_11305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rqi03400
]
C1M55_11305
Enzymes [BR:
rqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1M55_11305
DNA repair and recombination proteins [BR:
rqi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C1M55_11305
MMR (mismatch excision repair)
Other MMR factors
C1M55_11305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
HRDC
UvrD_C_2
AAA_30
C1_1
Motif
Other DBs
NCBI-ProteinID:
AUS31637
UniProt:
A0AAW6LIR4
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All DBs
Position
1:2441514..2443652
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AA seq
712 aa
AA seq
DB search
MMVPMPADTGLDPEQSAAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVADGHVSAGQVLA
VTFTARAAGEMRGRLRELGVGGSGPQVQARTFHAAALRQLKYFWPQVVGDTPWRLLDRKF
AVVSSAAARVGLSTSTESVRDLASEIEWSKASLIAPEDYPRAIAKIRREAPVDATKVAQV
YAAYEELKARGQDGMLLDFDDLLLHTAAALEEHSTVADEFRERYRCFVVDEYQDVTPLQQ
RVLDAWLGDRDDLTVVGDANQTIYSFTGATPNYLLDFSRKFPEATVVRLERDYRSTPEVV
SLANRVIGAARGRIAGTRLQLIGQRAPGPEPEFMEFDDEPAEALGVARAIKRLIAAGTPA
AEIAVLYRINAQSEAHEQALTKLGIPFQVRGGEGFFTRTEVRQAVAALRQAAGRDDLPEG
ADNGEALVSLVRAVLAPLGLTNEEPSGTQARERWASLSALVALTEEQLVHEPELTLTGLL
QELTARAEARHPPTVQGVTLASLHAAKGLEWDAVFLVGLNDGTLPIQHVLGDANSGADDV
AVEEERRLLYVGVTRAREHLQLSWALARNEGGRKSRRRSRFLNGLIPEDSPASRVAAPSS
GNKKRPRCRVCGKPLIGTSATMLGRCEKCPSNVDLELLEHLKAWRLDKSRELKVPAYVVF
SDNTLMAIAEQRPQDNRGLVSIPGIGPKKLDNFGEDVLAVIRGELRAATLDI
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgatggtccccatgcctgcggacaccggactggatccagaacaatcggccgccgtgctc
gcgccacgcggcccggtatgtgtcctcgcgggcgctggaacaggcaaaacccgcaccatc
acgcgccggatcgctcatctggttgccgacggtcacgtgtcggccggtcaggtgcttgcc
gtgacgttcaccgctcgtgcggccggggaaatgcgtggacgtctccgtgagctgggcgtc
ggcgggagtgggccgcaggtgcaggctcgaacttttcacgctgctgctctccgtcaactg
aagtacttctggccgcaggttgtcggcgacacgccgtggcgtctgctggaccgaaagttc
gcggttgtcagcagtgccgcagcccgggtgggattgtccaccagcacggaaagcgtccgc
gacctcgccagtgaaatcgagtggtcgaaggcgtcgctgatcgcgccggaggattaccca
cgcgcgatcgccaagattcgccgtgaggcaccggtcgatgccaccaaggtggcccaggtg
tatgccgcatacgaagagctgaaagcacgcggccaggacggcatgctgcttgatttcgac
gatctcctactgcacacggcggcagctctcgaagagcattcgacagtcgccgacgagttc
cgcgagcggtatcgctgcttcgtcgtggacgagtatcaggacgtcaccccactgcagcag
cgtgtgctcgacgcctggctgggcgaccgagacgatctgaccgtggtgggcgatgcgaat
cagaccatctactccttcaccggagccacccccaactatctgttggacttctcccggaaa
ttccccgaagcgaccgtcgttcggctcgaacgggattaccgctccacccctgaggtcgtg
tcgttggcgaaccgcgtgatcggtgccgcgcgcgggcggatcgccgggacgcgtctgcag
ctgatcgggcagcgcgctccggggcctgagccggagttcatggagttcgacgacgagccg
gccgaagcactcggcgttgcgcgggcgatcaaacggctgatcgcggcaggcacccctgcg
gccgagatcgctgttctgtaccggatcaatgctcagtcggaggcgcacgagcaggccctg
acgaagctgggcattccgttccaggtgcgcggtggagagggcttcttcactcgcaccgag
gtacgtcaggcggtggcagcgctgcgtcaggcagctggacgcgacgacctccccgaaggt
gcagacaacggcgaagcgctggtctcactcgtccgcgctgtgctcgcgccgctcggcctg
accaacgaagagccttcgggtactcaggcacgcgagcgctgggcgtcgctctcggctctc
gtggcgctcaccgaagaacaacttgtccacgaacctgaactgacgctcaccgggcttcta
caggagctcacggcccgagccgaggcgcggcacccaccgaccgtgcaaggtgtgacgctg
gcctccctccacgcggccaaggggctcgaatgggatgcggtgttcctggtcggcctcaac
gacggcaccctgcctatccaacacgttctcggcgacgccaattctggcgccgacgacgtc
gcggtggaggaggagcgtcggcttctctacgtgggggttactcgcgctcgcgagcatctg
cagctgtcgtgggcattggcccgcaatgagggtggacgcaagtcccgtcgccggtcgaga
tttctcaacggactaatcccggaggactcgccggcctcgcgcgtcgccgcgccgtcgtcg
ggaaacaagaagcgtccgcgctgccgcgtatgcggcaaaccgttgatcgggacgtcggcg
accatgctcgggcgctgcgaaaaatgcccgtccaatgtcgacctggaattgctcgagcac
ctcaaggcctggcgtctggacaagtccagagaactcaaagttccggcctatgtcgtcttc
agtgacaacacactgatggctattgccgaacaacgaccacaagataatcgtggactggtt
tcgatccctggaatcgggccgaagaaactcgacaacttcggggaagacgtactagctgtc
attcgcggtgaactgcgagcggcaacactcgatatctga
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